Experiment: BHIS with Fusidic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0304 and BT0305 are separated by 3 nucleotides BT0305 and BT0306 overlap by 1 nucleotides
BT0304: BT0304 - acriflavine resistance protein A precursor (NCBI ptt file), at 362,872 to 364,107
BT0304
BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215
BT0305
BT0306: BT0306 - outer membrane protein oprM precursor (NCBI ptt file), at 367,215 to 368,588
BT0306
Position (kb) 364
365
366
367
368 Strain fitness (log2 ratio) -2
-1
0
1
2 at 363.277 kb on - strand, within BT0304 at 363.290 kb on - strand, within BT0304 at 363.341 kb on - strand, within BT0304 at 363.442 kb on - strand, within BT0304 at 363.505 kb on - strand, within BT0304 at 363.509 kb on + strand, within BT0304 at 363.630 kb on - strand, within BT0304 at 363.649 kb on - strand, within BT0304 at 363.775 kb on - strand, within BT0304 at 363.861 kb on + strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.867 kb on + strand, within BT0304 at 363.877 kb on - strand, within BT0304 at 363.886 kb on - strand, within BT0304 at 363.903 kb on + strand, within BT0304 at 364.130 kb on + strand at 364.343 kb on - strand at 364.343 kb on - strand at 364.401 kb on - strand at 364.491 kb on + strand, within BT0305 at 364.524 kb on - strand, within BT0305 at 364.546 kb on - strand, within BT0305 at 364.650 kb on + strand, within BT0305 at 364.660 kb on + strand, within BT0305 at 364.661 kb on - strand, within BT0305 at 364.665 kb on + strand, within BT0305 at 364.770 kb on - strand, within BT0305 at 364.988 kb on - strand, within BT0305 at 364.988 kb on - strand, within BT0305 at 365.019 kb on - strand, within BT0305 at 365.108 kb on - strand, within BT0305 at 365.136 kb on + strand, within BT0305 at 365.233 kb on - strand, within BT0305 at 365.233 kb on - strand, within BT0305 at 365.233 kb on - strand, within BT0305 at 365.286 kb on + strand, within BT0305 at 365.368 kb on - strand, within BT0305 at 365.370 kb on + strand, within BT0305 at 365.395 kb on + strand, within BT0305 at 365.532 kb on + strand, within BT0305 at 365.681 kb on - strand, within BT0305 at 365.754 kb on + strand, within BT0305 at 365.817 kb on + strand, within BT0305 at 365.891 kb on - strand, within BT0305 at 365.911 kb on - strand, within BT0305 at 366.082 kb on + strand, within BT0305 at 366.090 kb on + strand, within BT0305 at 366.202 kb on + strand, within BT0305 at 366.219 kb on + strand, within BT0305 at 366.394 kb on + strand, within BT0305 at 366.395 kb on - strand, within BT0305 at 366.401 kb on + strand, within BT0305 at 366.406 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.487 kb on - strand, within BT0305 at 366.556 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.887 kb on + strand, within BT0305 at 367.180 kb on - strand at 367.231 kb on + strand at 367.232 kb on - strand at 367.235 kb on + strand at 367.236 kb on - strand at 367.241 kb on + strand at 367.291 kb on - strand at 367.313 kb on - strand at 367.405 kb on + strand, within BT0306 at 367.433 kb on + strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.732 kb on - strand, within BT0306 at 367.780 kb on + strand, within BT0306 at 367.852 kb on - strand, within BT0306 at 367.868 kb on - strand, within BT0306 at 368.060 kb on - strand, within BT0306
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Fusidic 0.004 mg/ml remove 363,277 - BT0304 0.33 +2.1 363,290 - BT0304 0.34 -0.5 363,341 - BT0304 0.38 -0.5 363,442 - BT0304 0.46 +0.1 363,505 - BT0304 0.51 +0.9 363,509 + BT0304 0.52 -0.3 363,630 - BT0304 0.61 -0.5 363,649 - BT0304 0.63 +0.7 363,775 - BT0304 0.73 -2.3 363,861 + BT0304 0.80 -1.5 363,862 - BT0304 0.80 +2.3 363,862 - BT0304 0.80 +0.2 363,862 - BT0304 0.80 -1.3 363,867 + BT0304 0.81 -0.2 363,877 - BT0304 0.81 +0.6 363,886 - BT0304 0.82 +0.3 363,903 + BT0304 0.83 +1.3 364,130 + +0.1 364,343 - +0.5 364,343 - -2.7 364,401 - +0.6 364,491 + BT0305 0.12 -2.4 364,524 - BT0305 0.13 +1.0 364,546 - BT0305 0.14 +0.2 364,650 + BT0305 0.17 -1.3 364,660 + BT0305 0.18 +1.3 364,661 - BT0305 0.18 +0.6 364,665 + BT0305 0.18 +0.3 364,770 - BT0305 0.21 +0.3 364,988 - BT0305 0.28 -1.6 364,988 - BT0305 0.28 -1.0 365,019 - BT0305 0.29 +0.4 365,108 - BT0305 0.32 +0.1 365,136 + BT0305 0.33 +0.5 365,233 - BT0305 0.36 -0.8 365,233 - BT0305 0.36 -0.7 365,233 - BT0305 0.36 -1.6 365,286 + BT0305 0.38 +1.0 365,368 - BT0305 0.40 -1.6 365,370 + BT0305 0.41 +0.5 365,395 + BT0305 0.41 +0.0 365,532 + BT0305 0.46 -0.5 365,681 - BT0305 0.51 -0.3 365,754 + BT0305 0.53 +2.3 365,817 + BT0305 0.55 +0.3 365,891 - BT0305 0.57 -0.5 365,911 - BT0305 0.58 +0.3 366,082 + BT0305 0.63 -1.7 366,090 + BT0305 0.64 -0.3 366,202 + BT0305 0.67 -0.1 366,219 + BT0305 0.68 -1.4 366,394 + BT0305 0.74 -0.7 366,395 - BT0305 0.74 -0.6 366,401 + BT0305 0.74 -0.8 366,406 - BT0305 0.74 +0.4 366,481 - BT0305 0.76 +0.0 366,481 - BT0305 0.76 +0.1 366,481 - BT0305 0.76 +0.7 366,481 - BT0305 0.76 -0.7 366,487 - BT0305 0.77 -1.3 366,556 - BT0305 0.79 +0.8 366,795 - BT0305 0.86 -0.1 366,795 - BT0305 0.86 -0.5 366,887 + BT0305 0.89 +0.0 367,180 - -0.9 367,231 + +0.1 367,232 - -0.8 367,235 + +0.2 367,236 - +0.0 367,241 + -0.3 367,291 - -0.1 367,313 - -0.1 367,405 + BT0306 0.14 +1.3 367,433 + BT0306 0.16 -0.2 367,729 - BT0306 0.37 -0.6 367,729 - BT0306 0.37 +1.4 367,732 - BT0306 0.38 -2.1 367,780 + BT0306 0.41 -0.8 367,852 - BT0306 0.46 -0.1 367,868 - BT0306 0.48 -0.3 368,060 - BT0306 0.61 -1.9
Or see this region's nucleotide sequence