Experiment: BHIS with Fusidic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0196 and BT0197 are separated by 258 nucleotides BT0197 and BT0198 are separated by 309 nucleotides
BT0196: BT0196 - putative hexose phosphate transport protein (NCBI ptt file), at 209,855 to 211,201
BT0196
BT0197: BT0197 - hypothetical protein (NCBI ptt file), at 211,460 to 212,059
BT0197
BT0198: BT0198 - hypothetical protein (NCBI ptt file), at 212,369 to 214,273
BT0198
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 210.468 kb on + strand, within BT0196 at 210.475 kb on - strand, within BT0196 at 210.640 kb on + strand, within BT0196 at 210.641 kb on - strand, within BT0196 at 210.644 kb on + strand, within BT0196 at 210.656 kb on + strand, within BT0196 at 210.755 kb on - strand, within BT0196 at 210.758 kb on - strand, within BT0196 at 210.850 kb on - strand, within BT0196 at 210.856 kb on - strand, within BT0196 at 210.871 kb on + strand, within BT0196 at 210.973 kb on + strand, within BT0196 at 211.028 kb on + strand, within BT0196 at 211.102 kb on - strand at 211.122 kb on - strand at 211.375 kb on + strand at 211.416 kb on + strand at 211.526 kb on - strand, within BT0197 at 211.584 kb on + strand, within BT0197 at 211.745 kb on + strand, within BT0197 at 211.842 kb on - strand, within BT0197 at 211.872 kb on - strand, within BT0197 at 211.872 kb on - strand, within BT0197 at 211.930 kb on + strand, within BT0197 at 211.956 kb on + strand, within BT0197 at 212.027 kb on - strand at 212.071 kb on + strand at 212.074 kb on + strand at 212.079 kb on + strand at 212.089 kb on + strand at 212.143 kb on - strand at 212.158 kb on + strand at 212.299 kb on + strand at 212.300 kb on - strand at 212.310 kb on - strand at 212.383 kb on + strand at 212.434 kb on - strand at 212.443 kb on - strand at 212.450 kb on - strand at 212.526 kb on - strand at 212.527 kb on + strand at 212.527 kb on + strand at 212.641 kb on + strand, within BT0198 at 212.698 kb on - strand, within BT0198 at 212.718 kb on - strand, within BT0198 at 212.876 kb on + strand, within BT0198
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Fusidic 0.004 mg/ml remove 210,468 + BT0196 0.46 -0.7 210,475 - BT0196 0.46 +1.6 210,640 + BT0196 0.58 +0.7 210,641 - BT0196 0.58 -2.4 210,644 + BT0196 0.59 +0.7 210,656 + BT0196 0.59 +0.3 210,755 - BT0196 0.67 +0.7 210,758 - BT0196 0.67 +0.6 210,850 - BT0196 0.74 -1.2 210,856 - BT0196 0.74 +0.2 210,871 + BT0196 0.75 +1.1 210,973 + BT0196 0.83 -2.1 211,028 + BT0196 0.87 +1.3 211,102 - +0.8 211,122 - +0.4 211,375 + -0.2 211,416 + -0.1 211,526 - BT0197 0.11 -1.9 211,584 + BT0197 0.21 -1.4 211,745 + BT0197 0.47 -3.5 211,842 - BT0197 0.64 -2.4 211,872 - BT0197 0.69 -0.1 211,872 - BT0197 0.69 -2.1 211,930 + BT0197 0.78 -3.2 211,956 + BT0197 0.83 -0.3 212,027 - -0.5 212,071 + +1.6 212,074 + -3.1 212,079 + -1.1 212,089 + -0.3 212,143 - -0.4 212,158 + -0.2 212,299 + +1.3 212,300 - +0.6 212,310 - -0.6 212,383 + +2.0 212,434 - -0.2 212,443 - +0.3 212,450 - -0.3 212,526 - +0.5 212,527 + +2.7 212,527 + +0.3 212,641 + BT0198 0.14 +0.5 212,698 - BT0198 0.17 +0.6 212,718 - BT0198 0.18 -0.3 212,876 + BT0198 0.27 -1.1
Or see this region's nucleotide sequence