Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01380

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01375 and MMP_RS01380 are separated by 20 nucleotidesMMP_RS01380 and MMP_RS01385 are separated by 35 nucleotidesMMP_RS01385 and MMP_RS01390 are separated by 11 nucleotides MMP_RS01375: MMP_RS01375 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 255,837 to 257,360 _RS01375 MMP_RS01380: MMP_RS01380 - PHP domain-containing protein, at 257,381 to 258,280 _RS01380 MMP_RS01385: MMP_RS01385 - imidazole glycerol phosphate synthase subunit HisH, at 258,316 to 258,927 _RS01385 MMP_RS01390: MMP_RS01390 - TATA-box-binding protein, at 258,939 to 259,484 _RS01390 Position (kb) 257 258 259Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 256.402 kb on - strand, within MMP_RS01375at 256.418 kb on - strand, within MMP_RS01375at 256.419 kb on + strand, within MMP_RS01375at 256.450 kb on - strand, within MMP_RS01375at 256.451 kb on + strand, within MMP_RS01375at 256.455 kb on + strand, within MMP_RS01375at 256.455 kb on + strand, within MMP_RS01375at 256.490 kb on - strand, within MMP_RS01375at 256.492 kb on - strand, within MMP_RS01375at 256.493 kb on + strand, within MMP_RS01375at 256.561 kb on + strand, within MMP_RS01375at 256.796 kb on + strand, within MMP_RS01375at 256.807 kb on + strand, within MMP_RS01375at 256.809 kb on + strand, within MMP_RS01375at 256.809 kb on + strand, within MMP_RS01375at 256.825 kb on - strand, within MMP_RS01375at 256.834 kb on - strand, within MMP_RS01375at 256.874 kb on - strand, within MMP_RS01375at 256.888 kb on - strand, within MMP_RS01375at 256.912 kb on - strand, within MMP_RS01375at 256.921 kb on + strand, within MMP_RS01375at 256.949 kb on - strand, within MMP_RS01375at 256.980 kb on - strand, within MMP_RS01375at 256.983 kb on + strand, within MMP_RS01375at 256.983 kb on + strand, within MMP_RS01375at 257.009 kb on - strand, within MMP_RS01375at 257.010 kb on + strand, within MMP_RS01375at 257.012 kb on + strand, within MMP_RS01375at 257.015 kb on - strand, within MMP_RS01375at 257.040 kb on - strand, within MMP_RS01375at 257.052 kb on - strand, within MMP_RS01375at 257.083 kb on - strand, within MMP_RS01375at 257.090 kb on + strand, within MMP_RS01375at 257.108 kb on + strand, within MMP_RS01375at 257.108 kb on + strand, within MMP_RS01375at 257.110 kb on - strand, within MMP_RS01375at 257.121 kb on + strand, within MMP_RS01375at 257.181 kb on + strand, within MMP_RS01375at 257.182 kb on - strand, within MMP_RS01375at 257.183 kb on + strand, within MMP_RS01375at 257.183 kb on + strand, within MMP_RS01375at 257.209 kb on + strandat 257.251 kb on + strandat 257.354 kb on + strandat 257.354 kb on + strandat 257.358 kb on - strandat 257.395 kb on + strandat 257.415 kb on - strandat 257.444 kb on - strandat 257.619 kb on - strand, within MMP_RS01380at 257.620 kb on + strand, within MMP_RS01380at 257.839 kb on + strand, within MMP_RS01380at 257.842 kb on - strand, within MMP_RS01380at 258.008 kb on - strand, within MMP_RS01380at 258.066 kb on + strand, within MMP_RS01380at 258.121 kb on + strand, within MMP_RS01380at 258.126 kb on + strand, within MMP_RS01380at 258.176 kb on - strand, within MMP_RS01380at 258.220 kb on - strandat 258.223 kb on + strandat 258.309 kb on - strandat 258.314 kb on + strandat 258.314 kb on + strandat 258.865 kb on - strand, within MMP_RS01385at 258.908 kb on - strandat 258.943 kb on - strandat 258.974 kb on - strandat 258.993 kb on - strandat 258.997 kb on - strandat 258.998 kb on + strandat 258.998 kb on + strandat 259.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE
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256,402 - MMP_RS01375 0.37 -2.5
256,418 - MMP_RS01375 0.38 -1.6
256,419 + MMP_RS01375 0.38 -1.2
256,450 - MMP_RS01375 0.40 -1.6
256,451 + MMP_RS01375 0.40 -2.0
256,455 + MMP_RS01375 0.41 -0.8
256,455 + MMP_RS01375 0.41 -0.8
256,490 - MMP_RS01375 0.43 -1.1
256,492 - MMP_RS01375 0.43 -1.3
256,493 + MMP_RS01375 0.43 -1.7
256,561 + MMP_RS01375 0.48 -0.1
256,796 + MMP_RS01375 0.63 -1.9
256,807 + MMP_RS01375 0.64 -1.0
256,809 + MMP_RS01375 0.64 -1.5
256,809 + MMP_RS01375 0.64 +0.2
256,825 - MMP_RS01375 0.65 -1.4
256,834 - MMP_RS01375 0.65 -1.0
256,874 - MMP_RS01375 0.68 -0.8
256,888 - MMP_RS01375 0.69 -0.6
256,912 - MMP_RS01375 0.71 -0.6
256,921 + MMP_RS01375 0.71 -1.0
256,949 - MMP_RS01375 0.73 -0.6
256,980 - MMP_RS01375 0.75 -0.6
256,983 + MMP_RS01375 0.75 -1.4
256,983 + MMP_RS01375 0.75 -0.9
257,009 - MMP_RS01375 0.77 +0.4
257,010 + MMP_RS01375 0.77 -1.1
257,012 + MMP_RS01375 0.77 -0.6
257,015 - MMP_RS01375 0.77 -1.7
257,040 - MMP_RS01375 0.79 -1.2
257,052 - MMP_RS01375 0.80 -1.5
257,083 - MMP_RS01375 0.82 -1.6
257,090 + MMP_RS01375 0.82 -0.6
257,108 + MMP_RS01375 0.83 -1.8
257,108 + MMP_RS01375 0.83 +0.1
257,110 - MMP_RS01375 0.84 -2.9
257,121 + MMP_RS01375 0.84 -0.9
257,181 + MMP_RS01375 0.88 -1.5
257,182 - MMP_RS01375 0.88 -2.6
257,183 + MMP_RS01375 0.88 -2.6
257,183 + MMP_RS01375 0.88 -1.4
257,209 + -1.7
257,251 + -1.4
257,354 + -0.9
257,354 + -0.6
257,358 - -4.4
257,395 + -4.3
257,415 - -2.5
257,444 - -4.6
257,619 - MMP_RS01380 0.26 -3.1
257,620 + MMP_RS01380 0.27 -5.0
257,839 + MMP_RS01380 0.51 -2.5
257,842 - MMP_RS01380 0.51 -2.8
258,008 - MMP_RS01380 0.70 -2.7
258,066 + MMP_RS01380 0.76 -3.5
258,121 + MMP_RS01380 0.82 -1.6
258,126 + MMP_RS01380 0.83 -3.3
258,176 - MMP_RS01380 0.88 -2.8
258,220 - -2.2
258,223 + -2.9
258,309 - +0.3
258,314 + -0.4
258,314 + -0.1
258,865 - MMP_RS01385 0.90 -4.2
258,908 - -2.6
258,943 - -3.6
258,974 - -4.5
258,993 - -4.8
258,997 - -2.9
258,998 + -1.5
258,998 + -3.4
259,147 + -3.9

Or see this region's nucleotide sequence