Experiment: Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0441 and Ga0059261_0442 are separated by 97 nucleotides Ga0059261_0442 and Ga0059261_0443 are separated by 336 nucleotides Ga0059261_0443 and Ga0059261_0444 overlap by 4 nucleotides Ga0059261_0444 and Ga0059261_0445 are separated by 3 nucleotides
Ga0059261_0441: Ga0059261_0441 - DNA-binding HTH domain-containing proteins, at 428,445 to 429,188
_0441
Ga0059261_0442: Ga0059261_0442 - Autoinducer synthetase, at 429,286 to 429,584
_0442
Ga0059261_0443: Ga0059261_0443 - RNA polymerase sigma factor, sigma-70 family, at 429,921 to 430,493
_0443
Ga0059261_0444: Ga0059261_0444 - Heavy-metal resistance, at 430,490 to 430,927
_0444
Ga0059261_0445: Ga0059261_0445 - hypothetical protein, at 430,931 to 431,263
_0445
Position (kb) 429
430
431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 429.106 kb on - strand, within Ga0059261_0441 at 429.157 kb on + strand at 429.189 kb on + strand at 429.190 kb on - strand at 429.190 kb on - strand at 429.199 kb on + strand at 429.199 kb on + strand at 429.200 kb on - strand at 429.200 kb on - strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.284 kb on - strand at 429.284 kb on - strand at 429.339 kb on + strand, within Ga0059261_0442 at 429.340 kb on - strand, within Ga0059261_0442 at 429.340 kb on - strand, within Ga0059261_0442 at 429.418 kb on + strand, within Ga0059261_0442 at 429.418 kb on + strand, within Ga0059261_0442 at 429.418 kb on + strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.488 kb on + strand, within Ga0059261_0442 at 429.488 kb on + strand, within Ga0059261_0442 at 429.488 kb on + strand, within Ga0059261_0442 at 429.488 kb on + strand, within Ga0059261_0442 at 429.504 kb on + strand, within Ga0059261_0442 at 429.545 kb on + strand, within Ga0059261_0442 at 429.546 kb on - strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.581 kb on + strand at 429.722 kb on + strand at 429.722 kb on + strand at 429.723 kb on - strand at 429.723 kb on - strand at 429.723 kb on - strand at 429.794 kb on - strand at 429.794 kb on - strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.965 kb on - strand at 429.965 kb on - strand at 430.004 kb on - strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.095 kb on + strand, within Ga0059261_0443 at 430.096 kb on - strand, within Ga0059261_0443 at 430.096 kb on - strand, within Ga0059261_0443 at 430.309 kb on + strand, within Ga0059261_0443 at 430.366 kb on + strand at 430.366 kb on + strand, within Ga0059261_0443 at 430.366 kb on + strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.384 kb on + strand, within Ga0059261_0443 at 430.418 kb on + strand, within Ga0059261_0443 at 430.418 kb on + strand, within Ga0059261_0443 at 430.419 kb on - strand, within Ga0059261_0443 at 430.419 kb on - strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.421 kb on - strand, within Ga0059261_0443 at 430.432 kb on + strand, within Ga0059261_0443 at 430.432 kb on + strand, within Ga0059261_0443 at 430.518 kb on - strand at 430.518 kb on - strand at 430.518 kb on - strand at 430.518 kb on - strand at 430.810 kb on + strand, within Ga0059261_0444 at 430.811 kb on - strand, within Ga0059261_0444 at 430.893 kb on - strand at 430.893 kb on - strand at 430.893 kb on - strand at 430.907 kb on - strand at 430.907 kb on - strand at 430.907 kb on - strand at 430.912 kb on + strand at 430.912 kb on + strand at 430.932 kb on + strand at 430.932 kb on + strand at 430.933 kb on - strand at 430.933 kb on - strand at 430.985 kb on + strand, within Ga0059261_0445 at 431.217 kb on - strand, within Ga0059261_0445 at 431.217 kb on - strand, within Ga0059261_0445 at 431.227 kb on + strand, within Ga0059261_0445 at 431.227 kb on + strand, within Ga0059261_0445 at 431.257 kb on + strand at 431.257 kb on + strand at 431.257 kb on + strand at 431.257 kb on + strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.347 kb on + strand at 431.347 kb on + strand at 431.389 kb on + strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.395 kb on + strand at 431.395 kb on + strand at 431.396 kb on - strand at 431.396 kb on - strand at 431.406 kb on + strand at 431.406 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.025 mg/ml remove 429,106 - Ga0059261_0441 0.89 -0.7 429,157 + -1.3 429,189 + +0.8 429,190 - +0.4 429,190 - +0.4 429,199 + -0.6 429,199 + +0.3 429,200 - -0.3 429,200 - -0.4 429,269 + -0.0 429,269 + -0.0 429,269 + -0.1 429,269 + -0.1 429,269 + -0.5 429,270 - +0.3 429,270 - -0.2 429,270 - -0.4 429,270 - -0.4 429,270 - +0.2 429,270 - -1.4 429,283 + +0.1 429,283 + +0.2 429,283 + -0.5 429,283 + -0.5 429,283 + -1.4 429,283 + -0.5 429,284 - -0.4 429,284 - -0.7 429,339 + Ga0059261_0442 0.18 -1.3 429,340 - Ga0059261_0442 0.18 -0.1 429,340 - Ga0059261_0442 0.18 -0.2 429,418 + Ga0059261_0442 0.44 -1.8 429,418 + Ga0059261_0442 0.44 +0.3 429,418 + Ga0059261_0442 0.44 -0.1 429,419 - Ga0059261_0442 0.44 -0.3 429,419 - Ga0059261_0442 0.44 +0.3 429,419 - Ga0059261_0442 0.44 -0.7 429,419 - Ga0059261_0442 0.44 +0.3 429,419 - Ga0059261_0442 0.44 +0.4 429,419 - Ga0059261_0442 0.44 -0.2 429,419 - Ga0059261_0442 0.44 -0.6 429,488 + Ga0059261_0442 0.68 -0.3 429,488 + Ga0059261_0442 0.68 -0.4 429,488 + Ga0059261_0442 0.68 -0.4 429,488 + Ga0059261_0442 0.68 -0.8 429,504 + Ga0059261_0442 0.73 -0.1 429,545 + Ga0059261_0442 0.87 -0.2 429,546 - Ga0059261_0442 0.87 +0.0 429,549 + Ga0059261_0442 0.88 +0.3 429,549 + Ga0059261_0442 0.88 -1.0 429,549 + Ga0059261_0442 0.88 -0.5 429,549 + Ga0059261_0442 0.88 -0.0 429,549 + Ga0059261_0442 0.88 +0.5 429,549 + Ga0059261_0442 0.88 -0.2 429,549 + Ga0059261_0442 0.88 +0.3 429,549 + Ga0059261_0442 0.88 -0.4 429,549 + Ga0059261_0442 0.88 -0.1 429,550 - Ga0059261_0442 0.88 +0.2 429,550 - Ga0059261_0442 0.88 +0.1 429,550 - Ga0059261_0442 0.88 +0.5 429,550 - Ga0059261_0442 0.88 +0.2 429,581 + -0.7 429,722 + -1.2 429,722 + +1.3 429,723 - +0.3 429,723 - -0.2 429,723 - -0.3 429,794 - -2.2 429,794 - +0.3 429,815 + -0.7 429,815 + -1.0 429,815 + -0.7 429,815 + +0.3 429,815 + +0.4 429,815 + -0.2 429,815 + -0.3 429,815 + -0.3 429,815 + +0.1 429,815 + -0.5 429,815 + +0.8 429,815 + -0.5 429,816 - -0.3 429,816 - -0.9 429,816 - +0.1 429,816 - -2.1 429,816 - +0.3 429,816 - +0.0 429,965 - -0.7 429,965 - +0.3 430,004 - Ga0059261_0443 0.14 +1.3 430,064 + Ga0059261_0443 0.25 -0.1 430,064 + Ga0059261_0443 0.25 -0.3 430,064 + Ga0059261_0443 0.25 -0.2 430,064 + Ga0059261_0443 0.25 -0.3 430,065 - Ga0059261_0443 0.25 +0.1 430,065 - Ga0059261_0443 0.25 -0.8 430,065 - Ga0059261_0443 0.25 -0.0 430,095 + Ga0059261_0443 0.30 -0.5 430,096 - Ga0059261_0443 0.31 +0.2 430,096 - Ga0059261_0443 0.31 -0.6 430,309 + Ga0059261_0443 0.68 -0.9 430,366 + +0.8 430,366 + Ga0059261_0443 0.78 -0.0 430,366 + Ga0059261_0443 0.78 -0.2 430,367 - Ga0059261_0443 0.78 -0.3 430,367 - Ga0059261_0443 0.78 -0.1 430,367 - Ga0059261_0443 0.78 -0.7 430,384 + Ga0059261_0443 0.81 +0.6 430,418 + Ga0059261_0443 0.87 +0.7 430,418 + Ga0059261_0443 0.87 -1.2 430,419 - Ga0059261_0443 0.87 -0.5 430,419 - Ga0059261_0443 0.87 -0.0 430,420 + Ga0059261_0443 0.87 -1.2 430,420 + Ga0059261_0443 0.87 +0.6 430,420 + Ga0059261_0443 0.87 +0.3 430,420 + Ga0059261_0443 0.87 +0.2 430,420 + Ga0059261_0443 0.87 +0.2 430,421 - Ga0059261_0443 0.87 -0.5 430,432 + Ga0059261_0443 0.89 -0.2 430,432 + Ga0059261_0443 0.89 -0.7 430,518 - +0.4 430,518 - -0.3 430,518 - -0.4 430,518 - +0.6 430,810 + Ga0059261_0444 0.73 -0.8 430,811 - Ga0059261_0444 0.73 -0.1 430,893 - +0.2 430,893 - -0.3 430,893 - +1.2 430,907 - -1.0 430,907 - -0.3 430,907 - -0.1 430,912 + -0.5 430,912 + -0.0 430,932 + -1.5 430,932 + +0.6 430,933 - -0.8 430,933 - +0.1 430,985 + Ga0059261_0445 0.16 -0.3 431,217 - Ga0059261_0445 0.86 -0.2 431,217 - Ga0059261_0445 0.86 +0.1 431,227 + Ga0059261_0445 0.89 -0.7 431,227 + Ga0059261_0445 0.89 +0.2 431,257 + -0.0 431,257 + -0.1 431,257 + +0.2 431,257 + -0.5 431,258 - -0.6 431,258 - -0.1 431,258 - +0.4 431,258 - +0.8 431,258 - -0.5 431,347 + +0.1 431,347 + +0.2 431,389 + -0.6 431,390 - -0.0 431,390 - -0.5 431,390 - +0.6 431,390 - +0.7 431,395 + -0.3 431,395 + -1.1 431,396 - -0.4 431,396 - -0.3 431,406 + -0.2 431,406 + -1.2 431,414 + +0.6 431,414 + +0.6 431,414 + -0.2 431,414 + -0.6 431,415 - +0.3 431,415 - +1.9 431,415 - +0.6 431,415 - +1.0 431,415 - +1.2 431,415 - +1.0
Or see this region's nucleotide sequence