Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4790

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4788 and Ac3H11_4789 are separated by 3 nucleotidesAc3H11_4789 and Ac3H11_4790 are separated by 288 nucleotidesAc3H11_4790 and Ac3H11_4791 are separated by 109 nucleotides Ac3H11_4788 - Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3), at 87,872 to 89,086 _4788 Ac3H11_4789 - hypothetical protein, at 89,090 to 89,209 _4789 Ac3H11_4790 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 89,498 to 90,727 _4790 Ac3H11_4791 - FAD/FMN-containing dehydrogenases, at 90,837 to 94,754 _4791 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 88.734 kb on + strand, within Ac3H11_4788at 88.734 kb on + strand, within Ac3H11_4788at 88.734 kb on + strand, within Ac3H11_4788at 88.734 kb on + strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.735 kb on - strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.737 kb on + strand, within Ac3H11_4788at 88.738 kb on - strand, within Ac3H11_4788at 88.738 kb on - strand, within Ac3H11_4788at 88.738 kb on - strand, within Ac3H11_4788at 88.738 kb on - strand, within Ac3H11_4788at 88.738 kb on - strand, within Ac3H11_4788at 88.738 kb on - strand, within Ac3H11_4788at 88.738 kb on - strand, within Ac3H11_4788at 88.738 kb on - strand, within Ac3H11_4788at 88.767 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.797 kb on + strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.798 kb on - strand, within Ac3H11_4788at 88.801 kb on - strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.821 kb on + strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.822 kb on - strand, within Ac3H11_4788at 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.989 kb on + strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 88.990 kb on - strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.001 kb on + strandat 89.002 kb on - strandat 89.002 kb on - strandat 89.002 kb on - strandat 89.002 kb on - strandat 89.002 kb on - strandat 89.002 kb on - strandat 89.002 kb on - strandat 89.002 kb on - strandat 89.002 kb on - strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.019 kb on + strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.020 kb on - strandat 89.040 kb on + strandat 89.040 kb on + strandat 89.040 kb on + strandat 89.040 kb on + strandat 89.040 kb on + strandat 89.040 kb on + strandat 89.040 kb on + strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.041 kb on - strandat 89.192 kb on + strand, within Ac3H11_4789at 89.192 kb on + strand, within Ac3H11_4789at 89.192 kb on + strand, within Ac3H11_4789at 89.192 kb on + strand, within Ac3H11_4789at 89.192 kb on + strand, within Ac3H11_4789at 89.192 kb on + strand, within Ac3H11_4789at 89.192 kb on + strand, within Ac3H11_4789at 89.192 kb on + strand, within Ac3H11_4789at 89.193 kb on - strand, within Ac3H11_4789at 89.193 kb on - strand, within Ac3H11_4789at 89.193 kb on - strand, within Ac3H11_4789at 89.193 kb on - strand, within Ac3H11_4789at 89.193 kb on - strand, within Ac3H11_4789at 89.233 kb on + strandat 89.233 kb on + strandat 89.233 kb on + strandat 89.233 kb on + strandat 89.233 kb on + strandat 89.233 kb on + strandat 89.233 kb on + strandat 89.233 kb on + strandat 89.233 kb on + strandat 89.233 kb on + strandat 89.234 kb on - strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.255 kb on + strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.256 kb on - strandat 89.270 kb on + strandat 89.271 kb on - strandat 89.491 kb on + strandat 89.491 kb on + strandat 89.491 kb on + strandat 89.491 kb on + strandat 89.492 kb on - strandat 89.492 kb on - strandat 89.492 kb on - strandat 89.591 kb on + strandat 89.593 kb on + strandat 89.770 kb on - strand, within Ac3H11_4790at 89.770 kb on - strand, within Ac3H11_4790at 89.770 kb on - strand, within Ac3H11_4790at 89.770 kb on - strand, within Ac3H11_4790at 89.813 kb on + strand, within Ac3H11_4790at 89.813 kb on + strand, within Ac3H11_4790at 89.814 kb on - strand, within Ac3H11_4790at 89.936 kb on + strand, within Ac3H11_4790at 89.937 kb on - strand, within Ac3H11_4790at 89.937 kb on - strand, within Ac3H11_4790at 89.937 kb on - strand, within Ac3H11_4790at 89.972 kb on + strand, within Ac3H11_4790at 90.020 kb on - strand, within Ac3H11_4790at 90.020 kb on - strand, within Ac3H11_4790at 90.020 kb on - strand, within Ac3H11_4790at 90.020 kb on - strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.441 kb on - strand, within Ac3H11_4790at 90.441 kb on - strand, within Ac3H11_4790at 90.441 kb on - strand, within Ac3H11_4790at 90.441 kb on - strand, within Ac3H11_4790at 90.605 kb on + strandat 90.605 kb on + strandat 90.632 kb on + strandat 90.633 kb on - strandat 90.633 kb on - strandat 90.805 kb on + strandat 90.805 kb on + strandat 90.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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88,734 + Ac3H11_4788 0.71 +0.2
88,734 + Ac3H11_4788 0.71 +1.6
88,734 + Ac3H11_4788 0.71 -0.8
88,734 + Ac3H11_4788 0.71 +0.4
88,735 - Ac3H11_4788 0.71 +0.2
88,735 - Ac3H11_4788 0.71 +0.5
88,735 - Ac3H11_4788 0.71 -1.9
88,735 - Ac3H11_4788 0.71 +0.1
88,735 - Ac3H11_4788 0.71 +0.1
88,735 - Ac3H11_4788 0.71 +0.1
88,735 - Ac3H11_4788 0.71 -1.1
88,735 - Ac3H11_4788 0.71 -0.0
88,735 - Ac3H11_4788 0.71 +2.3
88,735 - Ac3H11_4788 0.71 +1.6
88,737 + Ac3H11_4788 0.71 -0.9
88,737 + Ac3H11_4788 0.71 +0.0
88,737 + Ac3H11_4788 0.71 -0.7
88,737 + Ac3H11_4788 0.71 -0.0
88,737 + Ac3H11_4788 0.71 -1.3
88,737 + Ac3H11_4788 0.71 +0.9
88,737 + Ac3H11_4788 0.71 +0.5
88,737 + Ac3H11_4788 0.71 -0.3
88,737 + Ac3H11_4788 0.71 +0.2
88,737 + Ac3H11_4788 0.71 +0.4
88,737 + Ac3H11_4788 0.71 +0.8
88,737 + Ac3H11_4788 0.71 +0.4
88,738 - Ac3H11_4788 0.71 +0.7
88,738 - Ac3H11_4788 0.71 -0.1
88,738 - Ac3H11_4788 0.71 +0.1
88,738 - Ac3H11_4788 0.71 +1.2
88,738 - Ac3H11_4788 0.71 +0.8
88,738 - Ac3H11_4788 0.71 -0.5
88,738 - Ac3H11_4788 0.71 +1.4
88,738 - Ac3H11_4788 0.71 +0.2
88,767 + Ac3H11_4788 0.74 +0.8
88,797 + Ac3H11_4788 0.76 +0.6
88,797 + Ac3H11_4788 0.76 -0.8
88,797 + Ac3H11_4788 0.76 -0.2
88,797 + Ac3H11_4788 0.76 +0.2
88,797 + Ac3H11_4788 0.76 -0.1
88,797 + Ac3H11_4788 0.76 -0.3
88,797 + Ac3H11_4788 0.76 -0.7
88,797 + Ac3H11_4788 0.76 +0.3
88,797 + Ac3H11_4788 0.76 +0.2
88,797 + Ac3H11_4788 0.76 +0.2
88,797 + Ac3H11_4788 0.76 -0.9
88,797 + Ac3H11_4788 0.76 +0.6
88,798 - Ac3H11_4788 0.76 -0.2
88,798 - Ac3H11_4788 0.76 -0.9
88,798 - Ac3H11_4788 0.76 +0.2
88,798 - Ac3H11_4788 0.76 -0.1
88,798 - Ac3H11_4788 0.76 +0.4
88,798 - Ac3H11_4788 0.76 +0.1
88,798 - Ac3H11_4788 0.76 +1.4
88,798 - Ac3H11_4788 0.76 +0.0
88,798 - Ac3H11_4788 0.76 -0.0
88,798 - Ac3H11_4788 0.76 +0.8
88,801 - Ac3H11_4788 0.76 -2.1
88,821 + Ac3H11_4788 0.78 -0.4
88,821 + Ac3H11_4788 0.78 +0.2
88,821 + Ac3H11_4788 0.78 +1.2
88,821 + Ac3H11_4788 0.78 +0.7
88,821 + Ac3H11_4788 0.78 +0.1
88,821 + Ac3H11_4788 0.78 +0.3
88,821 + Ac3H11_4788 0.78 -0.3
88,821 + Ac3H11_4788 0.78 -0.4
88,821 + Ac3H11_4788 0.78 -0.9
88,821 + Ac3H11_4788 0.78 -0.0
88,821 + Ac3H11_4788 0.78 -0.2
88,822 - Ac3H11_4788 0.78 -0.5
88,822 - Ac3H11_4788 0.78 -2.0
88,822 - Ac3H11_4788 0.78 +0.4
88,822 - Ac3H11_4788 0.78 +0.2
88,822 - Ac3H11_4788 0.78 -0.5
88,822 - Ac3H11_4788 0.78 -0.2
88,822 - Ac3H11_4788 0.78 -0.4
88,822 - Ac3H11_4788 0.78 -1.3
88,822 - Ac3H11_4788 0.78 +0.9
88,822 - Ac3H11_4788 0.78 -2.2
88,822 - Ac3H11_4788 0.78 -0.3
88,822 - Ac3H11_4788 0.78 -0.6
88,989 + -0.4
88,989 + -0.4
88,989 + -0.6
88,989 + +0.3
88,989 + -0.3
88,989 + +0.3
88,989 + +0.2
88,989 + -0.5
88,989 + +1.7
88,989 + -2.7
88,989 + -2.4
88,989 + -0.2
88,989 + -0.6
88,990 - +0.5
88,990 - +0.6
88,990 - -0.4
88,990 - -0.9
88,990 - +1.9
88,990 - -1.2
88,990 - -1.8
88,990 - -1.7
88,990 - -0.7
88,990 - -0.3
88,990 - +0.3
89,001 + -0.2
89,001 + +1.1
89,001 + -0.8
89,001 + -2.3
89,001 + +0.3
89,001 + +1.2
89,001 + +0.3
89,001 + -1.2
89,001 + +0.2
89,001 + +0.2
89,001 + -1.6
89,001 + +0.4
89,001 + +0.1
89,002 - +0.3
89,002 - -0.1
89,002 - -0.0
89,002 - -2.2
89,002 - +0.3
89,002 - +0.0
89,002 - -0.2
89,002 - +0.2
89,002 - +1.7
89,019 + +0.6
89,019 + -0.0
89,019 + +0.1
89,019 + +0.7
89,019 + -1.7
89,019 + -0.5
89,019 + +1.5
89,019 + +0.9
89,019 + +0.7
89,019 + +0.6
89,019 + -0.3
89,019 + +0.5
89,020 - -0.1
89,020 - -1.0
89,020 - -0.1
89,020 - +0.5
89,020 - +0.9
89,020 - +1.1
89,020 - +0.0
89,020 - +0.2
89,020 - +1.2
89,020 - +1.1
89,020 - +0.4
89,020 - -0.5
89,020 - -0.2
89,040 + +0.4
89,040 + -0.7
89,040 + -0.4
89,040 + +0.8
89,040 + -0.4
89,040 + -0.4
89,040 + -0.7
89,041 - +0.7
89,041 - -0.2
89,041 - -0.3
89,041 - +0.8
89,041 - -0.9
89,041 - +0.3
89,041 - +1.1
89,041 - +0.3
89,041 - -0.4
89,041 - +0.7
89,041 - +0.2
89,041 - +0.1
89,041 - -1.5
89,041 - -0.3
89,192 + Ac3H11_4789 0.85 -0.5
89,192 + Ac3H11_4789 0.85 -0.5
89,192 + Ac3H11_4789 0.85 +0.4
89,192 + Ac3H11_4789 0.85 -0.8
89,192 + Ac3H11_4789 0.85 +0.9
89,192 + Ac3H11_4789 0.85 -1.0
89,192 + Ac3H11_4789 0.85 +0.4
89,192 + Ac3H11_4789 0.85 -0.4
89,193 - Ac3H11_4789 0.86 -0.5
89,193 - Ac3H11_4789 0.86 +3.1
89,193 - Ac3H11_4789 0.86 -0.8
89,193 - Ac3H11_4789 0.86 -2.2
89,193 - Ac3H11_4789 0.86 +1.1
89,233 + +0.6
89,233 + +0.4
89,233 + +0.4
89,233 + -0.2
89,233 + +0.1
89,233 + -1.6
89,233 + -0.1
89,233 + -0.2
89,233 + -0.4
89,233 + +1.0
89,234 - +5.2
89,255 + +0.1
89,255 + -0.6
89,255 + -0.7
89,255 + -1.4
89,255 + +0.9
89,255 + +1.0
89,255 + -1.1
89,255 + +0.6
89,255 + -0.4
89,255 + +0.1
89,255 + +1.0
89,255 + -1.7
89,255 + +1.2
89,255 + +0.9
89,255 + -0.1
89,256 - +0.6
89,256 - -0.5
89,256 - -0.1
89,256 - +2.1
89,256 - +1.3
89,256 - -1.0
89,256 - -1.8
89,256 - +0.8
89,256 - +0.6
89,256 - +2.9
89,256 - -0.5
89,256 - +1.5
89,270 + +0.5
89,271 - +1.0
89,491 + +0.7
89,491 + +1.0
89,491 + -0.1
89,491 + +0.5
89,492 - +1.3
89,492 - +3.3
89,492 - -1.7
89,591 + -1.3
89,593 + -1.3
89,770 - Ac3H11_4790 0.22 -0.5
89,770 - Ac3H11_4790 0.22 -0.9
89,770 - Ac3H11_4790 0.22 -1.9
89,770 - Ac3H11_4790 0.22 +1.6
89,813 + Ac3H11_4790 0.26 +0.0
89,813 + Ac3H11_4790 0.26 -0.2
89,814 - Ac3H11_4790 0.26 +2.2
89,936 + Ac3H11_4790 0.36 -0.5
89,937 - Ac3H11_4790 0.36 -1.0
89,937 - Ac3H11_4790 0.36 -0.3
89,937 - Ac3H11_4790 0.36 -1.0
89,972 + Ac3H11_4790 0.39 +1.2
90,020 - Ac3H11_4790 0.42 -0.2
90,020 - Ac3H11_4790 0.42 +0.5
90,020 - Ac3H11_4790 0.42 +0.7
90,020 - Ac3H11_4790 0.42 +1.4
90,042 + Ac3H11_4790 0.44 +1.9
90,042 + Ac3H11_4790 0.44 -0.1
90,042 + Ac3H11_4790 0.44 +0.2
90,042 + Ac3H11_4790 0.44 +0.5
90,042 + Ac3H11_4790 0.44 +1.1
90,042 + Ac3H11_4790 0.44 +1.1
90,042 + Ac3H11_4790 0.44 +0.1
90,042 + Ac3H11_4790 0.44 -0.8
90,043 - Ac3H11_4790 0.44 +0.5
90,043 - Ac3H11_4790 0.44 -0.9
90,043 - Ac3H11_4790 0.44 -1.7
90,043 - Ac3H11_4790 0.44 -0.0
90,043 - Ac3H11_4790 0.44 +0.5
90,043 - Ac3H11_4790 0.44 -1.9
90,440 + Ac3H11_4790 0.77 -0.0
90,440 + Ac3H11_4790 0.77 -3.0
90,440 + Ac3H11_4790 0.77 -0.6
90,440 + Ac3H11_4790 0.77 -0.0
90,440 + Ac3H11_4790 0.77 +0.5
90,441 - Ac3H11_4790 0.77 -1.1
90,441 - Ac3H11_4790 0.77 -0.3
90,441 - Ac3H11_4790 0.77 -0.0
90,441 - Ac3H11_4790 0.77 +0.9
90,605 + +0.7
90,605 + +0.1
90,632 + +0.7
90,633 - -0.1
90,633 - +1.1
90,805 + -1.6
90,805 + -2.3
90,805 + -1.2

Or see this region's nucleotide sequence