Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_443

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_442 and Ac3H11_443 are separated by 146 nucleotidesAc3H11_443 and Ac3H11_444 are separated by 118 nucleotides Ac3H11_442 - Cell division protein FtsH (EC 3.4.24.-), at 128,300 to 130,219 _442 Ac3H11_443 - Dihydropteroate synthase (EC 2.5.1.15), at 130,366 to 131,196 _443 Ac3H11_444 - Phosphoglucosamine mutase (EC 5.4.2.10), at 131,315 to 132,649 _444 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 130.198 kb on + strandat 130.199 kb on - strandat 130.199 kb on - strandat 130.320 kb on + strandat 130.320 kb on + strandat 130.320 kb on + strandat 130.320 kb on + strandat 130.320 kb on + strandat 130.321 kb on - strandat 130.321 kb on - strandat 130.321 kb on - strandat 130.321 kb on - strandat 130.321 kb on - strandat 130.321 kb on - strandat 130.321 kb on - strandat 130.356 kb on + strandat 130.356 kb on + strandat 130.357 kb on - strandat 131.234 kb on + strandat 131.234 kb on + strandat 131.234 kb on + strandat 131.234 kb on + strandat 131.288 kb on + strandat 131.288 kb on + strandat 131.288 kb on + strandat 131.288 kb on + strandat 131.288 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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130,198 + -0.6
130,199 - +0.8
130,199 - +3.2
130,320 + -1.2
130,320 + -2.4
130,320 + +2.3
130,320 + +3.9
130,320 + +0.5
130,321 - -1.4
130,321 - +1.1
130,321 - +2.0
130,321 - +1.1
130,321 - -0.6
130,321 - +1.6
130,321 - -1.0
130,356 + -2.0
130,356 + -1.1
130,357 - -0.5
131,234 + +0.1
131,234 + +0.1
131,234 + +0.4
131,234 + -1.2
131,288 + -0.1
131,288 + -1.5
131,288 + -1.0
131,288 + -1.6
131,288 + -1.3

Or see this region's nucleotide sequence