Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4062

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4061 and Ac3H11_4062 overlap by 4 nucleotidesAc3H11_4062 and Ac3H11_4063 are separated by 120 nucleotides Ac3H11_4061 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 307,312 to 309,891 _4061 Ac3H11_4062 - Conserved uncharacterized protein CreA, at 309,888 to 310,394 _4062 Ac3H11_4063 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 310,515 to 311,162 _4063 Position (kb) 309 310 311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 309.028 kb on + strand, within Ac3H11_4061at 309.028 kb on + strand, within Ac3H11_4061at 309.028 kb on + strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.029 kb on - strand, within Ac3H11_4061at 309.166 kb on + strand, within Ac3H11_4061at 309.166 kb on + strand, within Ac3H11_4061at 309.166 kb on + strand, within Ac3H11_4061at 309.166 kb on + strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.167 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.233 kb on - strand, within Ac3H11_4061at 309.490 kb on + strand, within Ac3H11_4061at 309.490 kb on + strand, within Ac3H11_4061at 309.491 kb on - strand, within Ac3H11_4061at 309.652 kb on + strandat 309.653 kb on - strandat 309.653 kb on - strandat 310.050 kb on + strand, within Ac3H11_4062at 310.083 kb on + strand, within Ac3H11_4062at 310.083 kb on + strand, within Ac3H11_4062at 310.083 kb on + strand, within Ac3H11_4062at 310.083 kb on + strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.084 kb on - strand, within Ac3H11_4062at 310.112 kb on + strand, within Ac3H11_4062at 310.112 kb on + strand, within Ac3H11_4062at 310.112 kb on + strand, within Ac3H11_4062at 310.112 kb on + strand, within Ac3H11_4062at 310.113 kb on - strand, within Ac3H11_4062at 310.305 kb on + strand, within Ac3H11_4062at 310.305 kb on + strand, within Ac3H11_4062at 310.306 kb on - strand, within Ac3H11_4062at 310.392 kb on + strandat 310.393 kb on - strandat 310.393 kb on - strandat 310.393 kb on - strandat 310.453 kb on - strandat 310.492 kb on + strandat 310.499 kb on + strandat 310.508 kb on + strandat 310.510 kb on + strandat 310.636 kb on + strand, within Ac3H11_4063at 310.636 kb on + strand, within Ac3H11_4063at 310.637 kb on - strand, within Ac3H11_4063at 310.777 kb on + strand, within Ac3H11_4063at 310.777 kb on + strand, within Ac3H11_4063at 310.864 kb on + strand, within Ac3H11_4063at 310.864 kb on + strand, within Ac3H11_4063at 310.864 kb on + strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.865 kb on - strand, within Ac3H11_4063at 310.967 kb on - strand, within Ac3H11_4063at 310.967 kb on - strand, within Ac3H11_4063at 311.175 kb on + strandat 311.175 kb on + strandat 311.197 kb on + strandat 311.197 kb on + strandat 311.197 kb on + strandat 311.198 kb on - strandat 311.198 kb on - strandat 311.198 kb on - strandat 311.198 kb on - strandat 311.198 kb on - strandat 311.241 kb on + strandat 311.242 kb on - strandat 311.257 kb on + strandat 311.257 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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309,028 + Ac3H11_4061 0.67 -1.4
309,028 + Ac3H11_4061 0.67 -2.4
309,028 + Ac3H11_4061 0.67 +0.1
309,029 - Ac3H11_4061 0.67 -2.9
309,029 - Ac3H11_4061 0.67 -2.5
309,029 - Ac3H11_4061 0.67 -1.7
309,029 - Ac3H11_4061 0.67 -2.3
309,029 - Ac3H11_4061 0.67 +0.5
309,029 - Ac3H11_4061 0.67 -1.0
309,166 + Ac3H11_4061 0.72 -1.8
309,166 + Ac3H11_4061 0.72 -1.1
309,166 + Ac3H11_4061 0.72 -0.7
309,166 + Ac3H11_4061 0.72 -1.6
309,167 - Ac3H11_4061 0.72 +0.1
309,167 - Ac3H11_4061 0.72 -2.6
309,167 - Ac3H11_4061 0.72 -3.0
309,167 - Ac3H11_4061 0.72 -1.7
309,167 - Ac3H11_4061 0.72 -1.6
309,233 - Ac3H11_4061 0.74 -1.7
309,233 - Ac3H11_4061 0.74 -3.2
309,233 - Ac3H11_4061 0.74 -2.7
309,233 - Ac3H11_4061 0.74 -0.9
309,233 - Ac3H11_4061 0.74 -1.4
309,490 + Ac3H11_4061 0.84 +0.2
309,490 + Ac3H11_4061 0.84 -1.3
309,491 - Ac3H11_4061 0.84 -1.3
309,652 + +0.5
309,653 - -3.5
309,653 - -1.2
310,050 + Ac3H11_4062 0.32 +0.7
310,083 + Ac3H11_4062 0.38 +0.8
310,083 + Ac3H11_4062 0.38 +0.4
310,083 + Ac3H11_4062 0.38 +0.1
310,083 + Ac3H11_4062 0.38 -0.8
310,084 - Ac3H11_4062 0.39 -0.7
310,084 - Ac3H11_4062 0.39 -1.7
310,084 - Ac3H11_4062 0.39 -2.7
310,084 - Ac3H11_4062 0.39 -0.1
310,084 - Ac3H11_4062 0.39 +0.1
310,112 + Ac3H11_4062 0.44 +1.9
310,112 + Ac3H11_4062 0.44 +1.6
310,112 + Ac3H11_4062 0.44 +0.1
310,112 + Ac3H11_4062 0.44 +0.6
310,113 - Ac3H11_4062 0.44 -2.2
310,305 + Ac3H11_4062 0.82 -0.2
310,305 + Ac3H11_4062 0.82 +2.3
310,306 - Ac3H11_4062 0.82 +0.0
310,392 + -1.5
310,393 - +0.2
310,393 - -0.9
310,393 - +1.1
310,453 - +0.7
310,492 + +0.7
310,499 + -0.8
310,508 + -0.3
310,510 + -3.1
310,636 + Ac3H11_4063 0.19 +0.9
310,636 + Ac3H11_4063 0.19 -0.6
310,637 - Ac3H11_4063 0.19 -0.7
310,777 + Ac3H11_4063 0.40 -1.5
310,777 + Ac3H11_4063 0.40 -0.3
310,864 + Ac3H11_4063 0.54 -2.6
310,864 + Ac3H11_4063 0.54 +1.2
310,864 + Ac3H11_4063 0.54 -2.5
310,865 - Ac3H11_4063 0.54 +0.4
310,865 - Ac3H11_4063 0.54 -1.0
310,865 - Ac3H11_4063 0.54 -0.9
310,865 - Ac3H11_4063 0.54 -0.4
310,865 - Ac3H11_4063 0.54 +0.2
310,865 - Ac3H11_4063 0.54 +1.0
310,865 - Ac3H11_4063 0.54 -0.8
310,967 - Ac3H11_4063 0.70 -0.2
310,967 - Ac3H11_4063 0.70 +1.4
311,175 + +0.1
311,175 + +1.5
311,197 + +2.3
311,197 + +0.1
311,197 + -1.9
311,198 - -1.8
311,198 - -0.9
311,198 - +0.8
311,198 - -0.2
311,198 - +0.3
311,241 + -1.4
311,242 - +2.7
311,257 + +1.4
311,257 + +0.3
311,268 + -0.4
311,268 + +0.5
311,268 + -0.2
311,268 + +0.1
311,268 + -0.3
311,268 + -1.5
311,268 + -1.4
311,268 + -1.7
311,269 - +0.4
311,269 - +1.6
311,269 - +0.3
311,269 - -2.1
311,269 - +0.1
311,269 - +0.4
311,270 + +0.7
311,270 + -2.0
311,270 + +0.9
311,270 + +0.8
311,270 + +0.1
311,270 + -0.2
311,270 + +1.0
311,270 + -1.3
311,270 + +0.0
311,271 - -2.3
311,271 - -1.0
311,271 - -0.3
311,271 - -0.6
311,271 - +2.0
311,271 - -0.5
311,271 - +1.5
311,271 - -2.6
311,271 - -0.4
311,271 - -0.5
311,271 - +0.8

Or see this region's nucleotide sequence