Experiment: inner cut, R2A soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3906 and Ac3H11_3907 are separated by 54 nucleotides Ac3H11_3907 and Ac3H11_3908 overlap by 4 nucleotides Ac3H11_3908 and Ac3H11_3909 are separated by 159 nucleotides
Ac3H11_3906 - putative iron-regulated membrane protein, at 124,432 to 125,574
_3906
Ac3H11_3907 - hypothetical protein, at 125,629 to 126,459
_3907
Ac3H11_3908 - hypothetical protein, at 126,456 to 126,806
_3908
Ac3H11_3909 - Putative membrane protein, at 126,966 to 127,610
_3909
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 124.699 kb on + strand, within Ac3H11_3906 at 124.699 kb on + strand, within Ac3H11_3906 at 124.699 kb on + strand, within Ac3H11_3906 at 124.700 kb on - strand, within Ac3H11_3906 at 124.700 kb on - strand, within Ac3H11_3906 at 124.700 kb on - strand, within Ac3H11_3906 at 124.700 kb on - strand, within Ac3H11_3906 at 124.810 kb on + strand, within Ac3H11_3906 at 124.811 kb on - strand, within Ac3H11_3906 at 124.811 kb on - strand, within Ac3H11_3906 at 125.077 kb on + strand, within Ac3H11_3906 at 125.077 kb on + strand, within Ac3H11_3906 at 125.077 kb on + strand, within Ac3H11_3906 at 125.077 kb on + strand, within Ac3H11_3906 at 125.078 kb on - strand, within Ac3H11_3906 at 125.078 kb on - strand, within Ac3H11_3906 at 125.078 kb on - strand, within Ac3H11_3906 at 125.078 kb on - strand, within Ac3H11_3906 at 125.078 kb on - strand, within Ac3H11_3906 at 125.083 kb on + strand, within Ac3H11_3906 at 125.083 kb on + strand, within Ac3H11_3906 at 125.083 kb on + strand, within Ac3H11_3906 at 125.084 kb on - strand, within Ac3H11_3906 at 125.084 kb on - strand, within Ac3H11_3906 at 125.084 kb on - strand, within Ac3H11_3906 at 125.176 kb on + strand, within Ac3H11_3906 at 125.176 kb on + strand, within Ac3H11_3906 at 125.176 kb on + strand, within Ac3H11_3906 at 125.177 kb on - strand, within Ac3H11_3906 at 125.177 kb on - strand, within Ac3H11_3906 at 125.218 kb on + strand, within Ac3H11_3906 at 125.218 kb on + strand, within Ac3H11_3906 at 125.218 kb on + strand, within Ac3H11_3906 at 125.218 kb on + strand, within Ac3H11_3906 at 125.218 kb on + strand, within Ac3H11_3906 at 125.218 kb on + strand, within Ac3H11_3906 at 125.219 kb on - strand, within Ac3H11_3906 at 125.219 kb on - strand, within Ac3H11_3906 at 125.219 kb on - strand, within Ac3H11_3906 at 125.219 kb on - strand, within Ac3H11_3906 at 125.219 kb on - strand, within Ac3H11_3906 at 125.219 kb on - strand, within Ac3H11_3906 at 125.219 kb on - strand, within Ac3H11_3906 at 125.441 kb on - strand, within Ac3H11_3906 at 126.218 kb on + strand, within Ac3H11_3907 at 126.295 kb on + strand, within Ac3H11_3907 at 126.847 kb on - strand at 126.847 kb on - strand at 126.847 kb on - strand at 127.452 kb on + strand, within Ac3H11_3909
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay remove 124,699 + Ac3H11_3906 0.23 -1.4 124,699 + Ac3H11_3906 0.23 +1.3 124,699 + Ac3H11_3906 0.23 -1.4 124,700 - Ac3H11_3906 0.23 -1.4 124,700 - Ac3H11_3906 0.23 -0.3 124,700 - Ac3H11_3906 0.23 -1.2 124,700 - Ac3H11_3906 0.23 -0.3 124,810 + Ac3H11_3906 0.33 +1.1 124,811 - Ac3H11_3906 0.33 +1.4 124,811 - Ac3H11_3906 0.33 -0.1 125,077 + Ac3H11_3906 0.56 -0.9 125,077 + Ac3H11_3906 0.56 +1.2 125,077 + Ac3H11_3906 0.56 -0.0 125,077 + Ac3H11_3906 0.56 -0.3 125,078 - Ac3H11_3906 0.57 +0.7 125,078 - Ac3H11_3906 0.57 +0.4 125,078 - Ac3H11_3906 0.57 -0.8 125,078 - Ac3H11_3906 0.57 +0.9 125,078 - Ac3H11_3906 0.57 +0.8 125,083 + Ac3H11_3906 0.57 -0.4 125,083 + Ac3H11_3906 0.57 +2.2 125,083 + Ac3H11_3906 0.57 -0.5 125,084 - Ac3H11_3906 0.57 -0.4 125,084 - Ac3H11_3906 0.57 +3.8 125,084 - Ac3H11_3906 0.57 -1.9 125,176 + Ac3H11_3906 0.65 -1.3 125,176 + Ac3H11_3906 0.65 -1.6 125,176 + Ac3H11_3906 0.65 -0.3 125,177 - Ac3H11_3906 0.65 +2.8 125,177 - Ac3H11_3906 0.65 +1.9 125,218 + Ac3H11_3906 0.69 -1.3 125,218 + Ac3H11_3906 0.69 -0.0 125,218 + Ac3H11_3906 0.69 +0.8 125,218 + Ac3H11_3906 0.69 -0.3 125,218 + Ac3H11_3906 0.69 +0.5 125,218 + Ac3H11_3906 0.69 -1.3 125,219 - Ac3H11_3906 0.69 -1.4 125,219 - Ac3H11_3906 0.69 -1.0 125,219 - Ac3H11_3906 0.69 +1.3 125,219 - Ac3H11_3906 0.69 +0.4 125,219 - Ac3H11_3906 0.69 -0.8 125,219 - Ac3H11_3906 0.69 -0.1 125,219 - Ac3H11_3906 0.69 +0.2 125,441 - Ac3H11_3906 0.88 +0.7 126,218 + Ac3H11_3907 0.71 -1.1 126,295 + Ac3H11_3907 0.80 +0.1 126,847 - -0.1 126,847 - +1.4 126,847 - +0.8 127,452 + Ac3H11_3909 0.75 +0.5
Or see this region's nucleotide sequence