Experiment: inner cut, R2A soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_378 and Ac3H11_379 overlap by 10 nucleotides Ac3H11_379 and Ac3H11_380 are separated by 244 nucleotides Ac3H11_380 and Ac3H11_381 are separated by 521 nucleotides
Ac3H11_378 - hypothetical protein, at 56,179 to 56,418
_378
Ac3H11_379 - hypothetical protein, at 56,409 to 56,615
_379
Ac3H11_380 - hypothetical protein, at 56,860 to 57,036
_380
Ac3H11_381 - Integrase, at 57,558 to 58,805
_381
Position (kb) 56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.686 kb on - strand at 55.686 kb on - strand at 55.686 kb on - strand at 55.776 kb on - strand at 55.837 kb on - strand at 56.038 kb on + strand at 56.038 kb on + strand at 56.038 kb on + strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.617 kb on - strand at 56.617 kb on - strand at 56.746 kb on + strand at 56.785 kb on + strand at 56.786 kb on - strand at 56.795 kb on - strand at 56.795 kb on - strand at 56.825 kb on + strand at 56.825 kb on + strand at 56.826 kb on - strand at 56.826 kb on - strand at 56.826 kb on - strand at 56.862 kb on - strand at 56.897 kb on + strand, within Ac3H11_380 at 56.897 kb on + strand, within Ac3H11_380 at 56.898 kb on - strand, within Ac3H11_380 at 56.898 kb on - strand, within Ac3H11_380 at 56.905 kb on + strand, within Ac3H11_380 at 56.906 kb on - strand, within Ac3H11_380 at 56.993 kb on + strand, within Ac3H11_380 at 57.049 kb on + strand at 57.049 kb on + strand at 57.050 kb on - strand at 57.050 kb on - strand at 57.050 kb on - strand at 57.103 kb on + strand at 57.103 kb on + strand at 57.103 kb on + strand at 57.144 kb on + strand at 57.144 kb on + strand at 57.145 kb on - strand at 57.145 kb on - strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.170 kb on + strand at 57.171 kb on - strand at 57.195 kb on - strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.274 kb on - strand at 57.274 kb on - strand at 57.613 kb on + strand at 57.614 kb on - strand at 57.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay remove 55,686 - -1.5 55,686 - -1.5 55,686 - -0.3 55,776 - -1.4 55,837 - +0.0 56,038 + +0.4 56,038 + +1.0 56,038 + -1.6 56,039 - +1.7 56,039 - -0.9 56,039 - -0.1 56,039 - -0.9 56,405 + -0.2 56,405 + -0.8 56,405 + +0.8 56,405 + +0.4 56,405 + -0.1 56,616 + -1.2 56,616 + -0.7 56,616 + +0.7 56,616 + -0.4 56,616 + -0.4 56,616 + +2.1 56,616 + +0.3 56,617 - +1.5 56,617 - -2.5 56,746 + -1.2 56,785 + -1.4 56,786 - -0.1 56,795 - +2.1 56,795 - +0.3 56,825 + +2.0 56,825 + -1.4 56,826 - -0.1 56,826 - +1.0 56,826 - -0.6 56,862 - -1.5 56,897 + Ac3H11_380 0.21 -0.4 56,897 + Ac3H11_380 0.21 -0.0 56,898 - Ac3H11_380 0.21 -0.1 56,898 - Ac3H11_380 0.21 -1.0 56,905 + Ac3H11_380 0.25 -0.4 56,906 - Ac3H11_380 0.26 -0.5 56,993 + Ac3H11_380 0.75 +0.4 57,049 + -0.1 57,049 + +1.2 57,050 - +1.0 57,050 - -0.3 57,050 - +0.1 57,103 + +0.7 57,103 + -2.8 57,103 + +0.9 57,144 + +0.1 57,144 + +0.6 57,145 - +0.3 57,145 - -0.3 57,148 + +0.6 57,148 + +0.9 57,148 + -0.7 57,148 + -0.2 57,148 + +0.2 57,148 + -1.9 57,148 + +0.0 57,148 + +0.9 57,148 + +0.7 57,148 + +0.3 57,148 + +0.1 57,148 + +1.0 57,149 - +0.0 57,149 - +0.5 57,149 - -0.9 57,149 - -2.5 57,149 - +0.4 57,149 - +0.7 57,149 - -0.8 57,149 - -1.1 57,149 - +2.3 57,149 - +1.1 57,170 + -0.2 57,171 - +0.2 57,195 - -0.9 57,273 + +2.4 57,273 + -0.8 57,273 + +0.1 57,273 + -1.9 57,274 - -1.1 57,274 - +2.4 57,613 + -1.4 57,614 - +0.9 57,614 - +0.0
Or see this region's nucleotide sequence