Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3763

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3762 and Ac3H11_3763 overlap by 4 nucleotidesAc3H11_3763 and Ac3H11_3764 are separated by 21 nucleotidesAc3H11_3764 and Ac3H11_3765 are separated by 50 nucleotides Ac3H11_3762 - Eha, at 13,972 to 15,165 _3762 Ac3H11_3763 - Phage transposase, at 15,162 to 16,940 _3763 Ac3H11_3764 - Phage protein, at 16,962 to 17,843 _3764 Ac3H11_3765 - Transcriptional regulator, IclR family, at 17,894 to 18,232 _3765 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1 2at 14.168 kb on + strand, within Ac3H11_3762at 14.168 kb on + strand, within Ac3H11_3762at 14.168 kb on + strand, within Ac3H11_3762at 14.364 kb on + strand, within Ac3H11_3762at 14.604 kb on - strand, within Ac3H11_3762at 14.866 kb on + strand, within Ac3H11_3762at 15.787 kb on + strand, within Ac3H11_3763at 15.787 kb on + strand, within Ac3H11_3763at 16.276 kb on + strand, within Ac3H11_3763at 16.276 kb on + strand, within Ac3H11_3763at 16.276 kb on + strand, within Ac3H11_3763at 16.343 kb on + strand, within Ac3H11_3763at 16.433 kb on - strand, within Ac3H11_3763at 16.540 kb on + strand, within Ac3H11_3763at 16.541 kb on - strand, within Ac3H11_3763at 16.852 kb on + strandat 16.852 kb on + strandat 16.963 kb on + strandat 17.124 kb on + strand, within Ac3H11_3764at 17.246 kb on + strand, within Ac3H11_3764at 17.736 kb on + strand, within Ac3H11_3764at 17.736 kb on + strand, within Ac3H11_3764at 17.736 kb on + strand, within Ac3H11_3764at 17.736 kb on + strand, within Ac3H11_3764at 17.737 kb on - strand, within Ac3H11_3764at 17.737 kb on - strand, within Ac3H11_3764at 17.847 kb on + strandat 17.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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14,168 + Ac3H11_3762 0.16 +0.9
14,168 + Ac3H11_3762 0.16 +0.7
14,168 + Ac3H11_3762 0.16 +1.1
14,364 + Ac3H11_3762 0.33 -0.4
14,604 - Ac3H11_3762 0.53 -1.1
14,866 + Ac3H11_3762 0.75 +1.1
15,787 + Ac3H11_3763 0.35 -0.7
15,787 + Ac3H11_3763 0.35 -0.5
16,276 + Ac3H11_3763 0.63 +0.5
16,276 + Ac3H11_3763 0.63 -2.1
16,276 + Ac3H11_3763 0.63 -0.4
16,343 + Ac3H11_3763 0.66 -0.0
16,433 - Ac3H11_3763 0.71 -0.7
16,540 + Ac3H11_3763 0.77 +1.9
16,541 - Ac3H11_3763 0.78 -0.6
16,852 + -0.3
16,852 + -0.5
16,963 + +0.5
17,124 + Ac3H11_3764 0.18 -0.8
17,246 + Ac3H11_3764 0.32 +0.1
17,736 + Ac3H11_3764 0.88 +2.0
17,736 + Ac3H11_3764 0.88 -0.8
17,736 + Ac3H11_3764 0.88 -0.2
17,736 + Ac3H11_3764 0.88 +0.3
17,737 - Ac3H11_3764 0.88 -1.0
17,737 - Ac3H11_3764 0.88 -1.5
17,847 + -2.1
17,847 + +0.2

Or see this region's nucleotide sequence