Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3194

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3193 and Ac3H11_3194 are separated by 90 nucleotidesAc3H11_3194 and Ac3H11_3195 are separated by 143 nucleotides Ac3H11_3193 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 95,032 to 95,937 _3193 Ac3H11_3194 - FIG022979: MoxR-like ATPases, at 96,028 to 96,948 _3194 Ac3H11_3195 - FIG002343: hypothetical protein, at 97,092 to 98,126 _3195 Position (kb) 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 95.033 kb on + strandat 95.033 kb on + strandat 95.033 kb on + strandat 95.033 kb on + strandat 95.033 kb on + strandat 95.033 kb on + strandat 95.033 kb on + strandat 95.033 kb on + strandat 95.033 kb on + strandat 95.033 kb on + strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.034 kb on - strandat 95.093 kb on + strandat 95.093 kb on + strandat 95.093 kb on + strandat 95.093 kb on + strandat 95.094 kb on - strandat 95.094 kb on - strandat 95.094 kb on - strandat 95.094 kb on - strandat 95.094 kb on - strandat 95.094 kb on - strandat 95.094 kb on - strandat 95.132 kb on + strand, within Ac3H11_3193at 95.174 kb on + strand, within Ac3H11_3193at 95.175 kb on - strand, within Ac3H11_3193at 95.175 kb on - strand, within Ac3H11_3193at 95.377 kb on - strand, within Ac3H11_3193at 95.377 kb on - strand, within Ac3H11_3193at 95.378 kb on + strand, within Ac3H11_3193at 95.378 kb on + strand, within Ac3H11_3193at 95.378 kb on + strand, within Ac3H11_3193at 95.379 kb on - strand, within Ac3H11_3193at 95.379 kb on - strand, within Ac3H11_3193at 95.379 kb on - strand, within Ac3H11_3193at 95.384 kb on + strand, within Ac3H11_3193at 95.384 kb on + strand, within Ac3H11_3193at 95.385 kb on - strand, within Ac3H11_3193at 95.385 kb on - strand, within Ac3H11_3193at 95.501 kb on + strand, within Ac3H11_3193at 95.501 kb on + strand, within Ac3H11_3193at 95.501 kb on + strand, within Ac3H11_3193at 95.501 kb on + strand, within Ac3H11_3193at 95.501 kb on + strand, within Ac3H11_3193at 95.502 kb on - strand, within Ac3H11_3193at 95.502 kb on - strand, within Ac3H11_3193at 95.502 kb on - strand, within Ac3H11_3193at 95.516 kb on + strand, within Ac3H11_3193at 95.516 kb on + strand, within Ac3H11_3193at 95.516 kb on + strand, within Ac3H11_3193at 95.516 kb on + strand, within Ac3H11_3193at 95.516 kb on + strand, within Ac3H11_3193at 95.516 kb on + strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.517 kb on - strand, within Ac3H11_3193at 95.727 kb on - strand, within Ac3H11_3193at 95.846 kb on + strandat 95.969 kb on + strandat 95.969 kb on + strandat 95.969 kb on + strandat 95.970 kb on - strandat 96.069 kb on + strandat 96.069 kb on + strandat 96.069 kb on + strandat 96.069 kb on + strandat 96.069 kb on + strandat 96.069 kb on + strandat 96.070 kb on - strandat 96.070 kb on - strandat 96.070 kb on - strandat 96.070 kb on - strandat 96.070 kb on - strandat 96.274 kb on + strand, within Ac3H11_3194at 96.274 kb on + strand, within Ac3H11_3194at 96.274 kb on + strand, within Ac3H11_3194at 96.275 kb on - strand, within Ac3H11_3194at 96.694 kb on + strand, within Ac3H11_3194at 96.694 kb on + strand, within Ac3H11_3194at 96.694 kb on + strand, within Ac3H11_3194at 96.695 kb on - strand, within Ac3H11_3194at 96.695 kb on - strand, within Ac3H11_3194at 96.695 kb on - strand, within Ac3H11_3194at 96.695 kb on - strand, within Ac3H11_3194at 96.695 kb on - strand, within Ac3H11_3194at 96.817 kb on + strand, within Ac3H11_3194at 96.817 kb on + strand, within Ac3H11_3194at 96.817 kb on + strand, within Ac3H11_3194at 96.817 kb on + strand, within Ac3H11_3194at 96.817 kb on + strand, within Ac3H11_3194at 96.817 kb on + strand, within Ac3H11_3194at 96.817 kb on + strand, within Ac3H11_3194at 96.818 kb on - strand, within Ac3H11_3194at 96.818 kb on - strand, within Ac3H11_3194at 96.905 kb on + strandat 97.036 kb on + strandat 97.037 kb on - strandat 97.037 kb on - strandat 97.242 kb on + strand, within Ac3H11_3195at 97.242 kb on + strand, within Ac3H11_3195at 97.242 kb on + strand, within Ac3H11_3195at 97.242 kb on + strand, within Ac3H11_3195at 97.242 kb on + strand, within Ac3H11_3195at 97.242 kb on + strand, within Ac3H11_3195at 97.243 kb on - strand, within Ac3H11_3195at 97.243 kb on - strand, within Ac3H11_3195at 97.243 kb on - strand, within Ac3H11_3195at 97.243 kb on - strand, within Ac3H11_3195at 97.243 kb on - strand, within Ac3H11_3195at 97.314 kb on + strand, within Ac3H11_3195at 97.314 kb on + strand, within Ac3H11_3195at 97.314 kb on + strand, within Ac3H11_3195at 97.314 kb on + strand, within Ac3H11_3195at 97.315 kb on - strand, within Ac3H11_3195at 97.315 kb on - strand, within Ac3H11_3195at 97.315 kb on - strand, within Ac3H11_3195at 97.315 kb on - strand, within Ac3H11_3195at 97.315 kb on - strand, within Ac3H11_3195

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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95,033 + -0.1
95,033 + -0.9
95,033 + -0.2
95,033 + -1.1
95,033 + +1.1
95,033 + -1.4
95,033 + +0.3
95,033 + +0.5
95,033 + +0.4
95,033 + +0.7
95,034 - -0.5
95,034 - -2.4
95,034 - -3.0
95,034 - -0.1
95,034 - -0.0
95,034 - +0.1
95,034 - -0.8
95,034 - +0.2
95,034 - +0.8
95,034 - -0.1
95,093 + -0.4
95,093 + +0.4
95,093 + +0.4
95,093 + +1.5
95,094 - -1.4
95,094 - +0.9
95,094 - -0.4
95,094 - +0.7
95,094 - -0.3
95,094 - +1.2
95,094 - -0.3
95,132 + Ac3H11_3193 0.11 -0.5
95,174 + Ac3H11_3193 0.16 -0.5
95,175 - Ac3H11_3193 0.16 +2.0
95,175 - Ac3H11_3193 0.16 -0.8
95,377 - Ac3H11_3193 0.38 -1.0
95,377 - Ac3H11_3193 0.38 +0.9
95,378 + Ac3H11_3193 0.38 +0.5
95,378 + Ac3H11_3193 0.38 -2.1
95,378 + Ac3H11_3193 0.38 -0.1
95,379 - Ac3H11_3193 0.38 +0.6
95,379 - Ac3H11_3193 0.38 +2.3
95,379 - Ac3H11_3193 0.38 -0.9
95,384 + Ac3H11_3193 0.39 -0.9
95,384 + Ac3H11_3193 0.39 -0.2
95,385 - Ac3H11_3193 0.39 -0.7
95,385 - Ac3H11_3193 0.39 -2.8
95,501 + Ac3H11_3193 0.52 -0.4
95,501 + Ac3H11_3193 0.52 -1.0
95,501 + Ac3H11_3193 0.52 +0.7
95,501 + Ac3H11_3193 0.52 -0.7
95,501 + Ac3H11_3193 0.52 +1.6
95,502 - Ac3H11_3193 0.52 -2.1
95,502 - Ac3H11_3193 0.52 +2.1
95,502 - Ac3H11_3193 0.52 +0.1
95,516 + Ac3H11_3193 0.53 -1.7
95,516 + Ac3H11_3193 0.53 -0.6
95,516 + Ac3H11_3193 0.53 -0.1
95,516 + Ac3H11_3193 0.53 +1.5
95,516 + Ac3H11_3193 0.53 -1.1
95,516 + Ac3H11_3193 0.53 +0.3
95,517 - Ac3H11_3193 0.54 -1.0
95,517 - Ac3H11_3193 0.54 -1.6
95,517 - Ac3H11_3193 0.54 +0.0
95,517 - Ac3H11_3193 0.54 +0.2
95,517 - Ac3H11_3193 0.54 +0.7
95,517 - Ac3H11_3193 0.54 +0.9
95,517 - Ac3H11_3193 0.54 -2.1
95,517 - Ac3H11_3193 0.54 +0.3
95,517 - Ac3H11_3193 0.54 -0.3
95,517 - Ac3H11_3193 0.54 -0.1
95,517 - Ac3H11_3193 0.54 -0.4
95,727 - Ac3H11_3193 0.77 -0.1
95,846 + +2.1
95,969 + +1.8
95,969 + +1.0
95,969 + +1.8
95,970 - -1.5
96,069 + -0.1
96,069 + -0.2
96,069 + +1.1
96,069 + -0.1
96,069 + -0.3
96,069 + -0.2
96,070 - +1.5
96,070 - -0.4
96,070 - +2.3
96,070 - +0.6
96,070 - -0.8
96,274 + Ac3H11_3194 0.27 +0.8
96,274 + Ac3H11_3194 0.27 +1.8
96,274 + Ac3H11_3194 0.27 -0.6
96,275 - Ac3H11_3194 0.27 +0.3
96,694 + Ac3H11_3194 0.72 +2.1
96,694 + Ac3H11_3194 0.72 +1.2
96,694 + Ac3H11_3194 0.72 +1.2
96,695 - Ac3H11_3194 0.72 +3.3
96,695 - Ac3H11_3194 0.72 -0.6
96,695 - Ac3H11_3194 0.72 -1.5
96,695 - Ac3H11_3194 0.72 +0.0
96,695 - Ac3H11_3194 0.72 +4.8
96,817 + Ac3H11_3194 0.86 +0.3
96,817 + Ac3H11_3194 0.86 -1.1
96,817 + Ac3H11_3194 0.86 -1.5
96,817 + Ac3H11_3194 0.86 +0.3
96,817 + Ac3H11_3194 0.86 +0.5
96,817 + Ac3H11_3194 0.86 -1.1
96,817 + Ac3H11_3194 0.86 +0.0
96,818 - Ac3H11_3194 0.86 -0.4
96,818 - Ac3H11_3194 0.86 +0.5
96,905 + +0.5
97,036 + +3.7
97,037 - -0.5
97,037 - -0.7
97,242 + Ac3H11_3195 0.14 -1.8
97,242 + Ac3H11_3195 0.14 -0.5
97,242 + Ac3H11_3195 0.14 +0.6
97,242 + Ac3H11_3195 0.14 -3.2
97,242 + Ac3H11_3195 0.14 +0.7
97,242 + Ac3H11_3195 0.14 -0.6
97,243 - Ac3H11_3195 0.15 +0.1
97,243 - Ac3H11_3195 0.15 +1.6
97,243 - Ac3H11_3195 0.15 +0.9
97,243 - Ac3H11_3195 0.15 +1.7
97,243 - Ac3H11_3195 0.15 +0.2
97,314 + Ac3H11_3195 0.21 +0.1
97,314 + Ac3H11_3195 0.21 +0.6
97,314 + Ac3H11_3195 0.21 +1.7
97,314 + Ac3H11_3195 0.21 -0.5
97,315 - Ac3H11_3195 0.22 -0.2
97,315 - Ac3H11_3195 0.22 +0.8
97,315 - Ac3H11_3195 0.22 +2.0
97,315 - Ac3H11_3195 0.22 +0.7
97,315 - Ac3H11_3195 0.22 +0.2

Or see this region's nucleotide sequence