Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2364

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2363 and Ac3H11_2364 are separated by 329 nucleotidesAc3H11_2364 and Ac3H11_2365 are separated by 159 nucleotides Ac3H11_2363 - hypothetical protein, at 621,225 to 621,614 _2363 Ac3H11_2364 - Ferrichrome-iron receptor, at 621,944 to 624,139 _2364 Ac3H11_2365 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 624,299 to 625,912 _2365 Position (kb) 621 622 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 620.968 kb on + strandat 620.969 kb on - strandat 620.969 kb on - strandat 620.969 kb on - strandat 621.022 kb on + strandat 621.023 kb on - strandat 621.023 kb on - strandat 621.023 kb on - strandat 621.045 kb on + strandat 621.046 kb on - strandat 621.053 kb on + strandat 621.054 kb on - strandat 621.128 kb on + strandat 621.128 kb on + strandat 621.128 kb on + strandat 621.128 kb on + strandat 621.128 kb on + strandat 621.129 kb on - strandat 621.129 kb on - strandat 621.129 kb on - strandat 621.129 kb on - strandat 621.129 kb on - strandat 621.208 kb on + strandat 621.208 kb on + strandat 621.209 kb on - strandat 621.310 kb on + strand, within Ac3H11_2363at 621.310 kb on + strand, within Ac3H11_2363at 621.310 kb on + strand, within Ac3H11_2363at 621.310 kb on + strand, within Ac3H11_2363at 621.310 kb on + strand, within Ac3H11_2363at 621.311 kb on - strand, within Ac3H11_2363at 621.342 kb on - strand, within Ac3H11_2363at 621.342 kb on - strand, within Ac3H11_2363at 621.551 kb on + strand, within Ac3H11_2363at 621.551 kb on + strand, within Ac3H11_2363at 621.707 kb on + strandat 621.707 kb on + strandat 621.707 kb on + strandat 621.707 kb on + strandat 621.707 kb on + strandat 621.711 kb on + strandat 621.711 kb on + strandat 621.711 kb on + strandat 621.712 kb on - strandat 621.712 kb on - strandat 621.712 kb on - strandat 621.712 kb on - strandat 621.718 kb on - strandat 621.718 kb on - strandat 621.736 kb on + strandat 621.737 kb on - strandat 621.737 kb on - strandat 621.795 kb on - strandat 621.920 kb on + strandat 621.921 kb on - strandat 621.921 kb on - strandat 621.921 kb on - strandat 621.921 kb on - strandat 622.114 kb on - strandat 622.145 kb on + strandat 622.145 kb on + strandat 622.145 kb on + strandat 622.145 kb on + strandat 622.145 kb on + strandat 622.145 kb on + strandat 622.145 kb on + strandat 622.145 kb on + strandat 622.146 kb on - strandat 622.146 kb on - strandat 622.146 kb on - strandat 622.146 kb on - strandat 622.146 kb on - strandat 622.146 kb on - strandat 622.148 kb on + strandat 622.149 kb on - strandat 622.149 kb on - strandat 622.149 kb on - strandat 622.149 kb on - strandat 622.149 kb on - strandat 622.149 kb on - strandat 622.274 kb on + strand, within Ac3H11_2364at 622.274 kb on + strand, within Ac3H11_2364at 622.274 kb on + strand, within Ac3H11_2364at 622.274 kb on + strand, within Ac3H11_2364at 622.274 kb on + strand, within Ac3H11_2364at 622.275 kb on - strand, within Ac3H11_2364at 622.275 kb on - strand, within Ac3H11_2364at 622.275 kb on - strand, within Ac3H11_2364at 622.275 kb on - strand, within Ac3H11_2364at 622.275 kb on - strand, within Ac3H11_2364at 622.275 kb on - strand, within Ac3H11_2364at 622.275 kb on - strand, within Ac3H11_2364at 622.405 kb on + strand, within Ac3H11_2364at 622.405 kb on + strand, within Ac3H11_2364at 622.406 kb on - strand, within Ac3H11_2364at 622.472 kb on + strand, within Ac3H11_2364at 622.472 kb on + strand, within Ac3H11_2364at 622.472 kb on + strand, within Ac3H11_2364at 622.472 kb on + strand, within Ac3H11_2364at 622.472 kb on + strand, within Ac3H11_2364at 622.472 kb on + strand, within Ac3H11_2364at 622.566 kb on - strand, within Ac3H11_2364at 622.566 kb on - strand, within Ac3H11_2364at 622.566 kb on - strand, within Ac3H11_2364at 623.124 kb on - strand, within Ac3H11_2364at 623.207 kb on + strand, within Ac3H11_2364at 623.208 kb on - strand, within Ac3H11_2364at 623.276 kb on + strand, within Ac3H11_2364at 623.276 kb on + strand, within Ac3H11_2364at 623.276 kb on + strand, within Ac3H11_2364at 623.276 kb on + strand, within Ac3H11_2364at 623.276 kb on + strand, within Ac3H11_2364at 623.276 kb on + strand, within Ac3H11_2364at 623.277 kb on - strand, within Ac3H11_2364at 623.277 kb on - strand, within Ac3H11_2364at 623.277 kb on - strand, within Ac3H11_2364at 623.277 kb on - strand, within Ac3H11_2364at 623.277 kb on - strand, within Ac3H11_2364at 623.277 kb on - strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.342 kb on + strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.343 kb on - strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.453 kb on + strand, within Ac3H11_2364at 623.454 kb on - strand, within Ac3H11_2364at 623.454 kb on - strand, within Ac3H11_2364at 623.605 kb on + strand, within Ac3H11_2364at 623.605 kb on + strand, within Ac3H11_2364at 623.605 kb on + strand, within Ac3H11_2364at 623.605 kb on + strand, within Ac3H11_2364at 623.606 kb on - strand, within Ac3H11_2364at 623.606 kb on - strand, within Ac3H11_2364at 623.606 kb on - strand, within Ac3H11_2364at 623.838 kb on - strand, within Ac3H11_2364at 623.838 kb on - strand, within Ac3H11_2364at 623.838 kb on - strand, within Ac3H11_2364at 623.868 kb on - strand, within Ac3H11_2364at 623.899 kb on + strand, within Ac3H11_2364at 623.900 kb on - strand, within Ac3H11_2364at 623.900 kb on - strand, within Ac3H11_2364at 623.969 kb on + strandat 623.969 kb on + strandat 623.969 kb on + strandat 623.969 kb on + strandat 623.969 kb on + strandat 623.970 kb on - strandat 623.970 kb on - strandat 623.970 kb on - strandat 623.970 kb on - strandat 623.993 kb on + strandat 624.059 kb on + strandat 624.059 kb on + strandat 624.059 kb on + strandat 624.059 kb on + strandat 624.059 kb on + strandat 624.060 kb on - strandat 624.060 kb on - strandat 624.071 kb on + strandat 624.072 kb on - strandat 624.072 kb on - strandat 624.489 kb on - strand, within Ac3H11_2365at 624.836 kb on + strand, within Ac3H11_2365at 624.836 kb on + strand, within Ac3H11_2365at 624.837 kb on - strand, within Ac3H11_2365at 624.837 kb on - strand, within Ac3H11_2365at 624.939 kb on - strand, within Ac3H11_2365at 624.939 kb on - strand, within Ac3H11_2365at 624.975 kb on - strand, within Ac3H11_2365at 625.040 kb on + strand, within Ac3H11_2365at 625.041 kb on - strand, within Ac3H11_2365

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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620,968 + +0.5
620,969 - +0.4
620,969 - -1.3
620,969 - +0.3
621,022 + +0.8
621,023 - -0.2
621,023 - +0.4
621,023 - -0.1
621,045 + +1.7
621,046 - -2.1
621,053 + -0.8
621,054 - +0.7
621,128 + -0.1
621,128 + +0.8
621,128 + +1.4
621,128 + +0.8
621,128 + +0.1
621,129 - -0.2
621,129 - -1.3
621,129 - -0.8
621,129 - -0.2
621,129 - +0.4
621,208 + -1.1
621,208 + -1.1
621,209 - +0.6
621,310 + Ac3H11_2363 0.22 +0.4
621,310 + Ac3H11_2363 0.22 -0.2
621,310 + Ac3H11_2363 0.22 +0.4
621,310 + Ac3H11_2363 0.22 +0.2
621,310 + Ac3H11_2363 0.22 +1.8
621,311 - Ac3H11_2363 0.22 -0.3
621,342 - Ac3H11_2363 0.30 -1.4
621,342 - Ac3H11_2363 0.30 +1.4
621,551 + Ac3H11_2363 0.84 +0.9
621,551 + Ac3H11_2363 0.84 -0.8
621,707 + -0.4
621,707 + +0.3
621,707 + -0.9
621,707 + -0.9
621,707 + +1.4
621,711 + +1.2
621,711 + +0.2
621,711 + +0.7
621,712 - +1.4
621,712 - -0.4
621,712 - +1.0
621,712 - -0.3
621,718 - -1.5
621,718 - +1.6
621,736 + +0.4
621,737 - -0.1
621,737 - +1.9
621,795 - -0.2
621,920 + -0.0
621,921 - -0.8
621,921 - +0.7
621,921 - -2.4
621,921 - -0.7
622,114 - +0.7
622,145 + -1.5
622,145 + -0.3
622,145 + +0.9
622,145 + -0.4
622,145 + +0.7
622,145 + +2.4
622,145 + -1.3
622,145 + -0.6
622,146 - -1.6
622,146 - -1.5
622,146 - +1.0
622,146 - -0.8
622,146 - +0.2
622,146 - +0.8
622,148 + -0.3
622,149 - -0.1
622,149 - -0.2
622,149 - +2.1
622,149 - -0.7
622,149 - +1.5
622,149 - +2.2
622,274 + Ac3H11_2364 0.15 -1.3
622,274 + Ac3H11_2364 0.15 +2.7
622,274 + Ac3H11_2364 0.15 +0.1
622,274 + Ac3H11_2364 0.15 +2.2
622,274 + Ac3H11_2364 0.15 -0.1
622,275 - Ac3H11_2364 0.15 -0.3
622,275 - Ac3H11_2364 0.15 +1.7
622,275 - Ac3H11_2364 0.15 +1.8
622,275 - Ac3H11_2364 0.15 +0.2
622,275 - Ac3H11_2364 0.15 +0.5
622,275 - Ac3H11_2364 0.15 -0.3
622,275 - Ac3H11_2364 0.15 +1.0
622,405 + Ac3H11_2364 0.21 +2.0
622,405 + Ac3H11_2364 0.21 -1.1
622,406 - Ac3H11_2364 0.21 +0.7
622,472 + Ac3H11_2364 0.24 +1.2
622,472 + Ac3H11_2364 0.24 -0.6
622,472 + Ac3H11_2364 0.24 +0.7
622,472 + Ac3H11_2364 0.24 +0.4
622,472 + Ac3H11_2364 0.24 +0.6
622,472 + Ac3H11_2364 0.24 +1.3
622,566 - Ac3H11_2364 0.28 +0.5
622,566 - Ac3H11_2364 0.28 -1.2
622,566 - Ac3H11_2364 0.28 +0.4
623,124 - Ac3H11_2364 0.54 +0.2
623,207 + Ac3H11_2364 0.58 -0.3
623,208 - Ac3H11_2364 0.58 +0.7
623,276 + Ac3H11_2364 0.61 +0.6
623,276 + Ac3H11_2364 0.61 -0.2
623,276 + Ac3H11_2364 0.61 -0.8
623,276 + Ac3H11_2364 0.61 +0.3
623,276 + Ac3H11_2364 0.61 -1.2
623,276 + Ac3H11_2364 0.61 +0.2
623,277 - Ac3H11_2364 0.61 -0.0
623,277 - Ac3H11_2364 0.61 +1.0
623,277 - Ac3H11_2364 0.61 +1.3
623,277 - Ac3H11_2364 0.61 -2.2
623,277 - Ac3H11_2364 0.61 +0.4
623,277 - Ac3H11_2364 0.61 +0.2
623,342 + Ac3H11_2364 0.64 +0.9
623,342 + Ac3H11_2364 0.64 +0.1
623,342 + Ac3H11_2364 0.64 +0.2
623,342 + Ac3H11_2364 0.64 +0.5
623,342 + Ac3H11_2364 0.64 +0.0
623,343 - Ac3H11_2364 0.64 +2.4
623,343 - Ac3H11_2364 0.64 +0.2
623,343 - Ac3H11_2364 0.64 -0.6
623,343 - Ac3H11_2364 0.64 +1.1
623,343 - Ac3H11_2364 0.64 +2.5
623,343 - Ac3H11_2364 0.64 +0.2
623,343 - Ac3H11_2364 0.64 -0.0
623,343 - Ac3H11_2364 0.64 +0.5
623,343 - Ac3H11_2364 0.64 -0.4
623,453 + Ac3H11_2364 0.69 -1.0
623,453 + Ac3H11_2364 0.69 -0.1
623,453 + Ac3H11_2364 0.69 -0.9
623,453 + Ac3H11_2364 0.69 +1.1
623,453 + Ac3H11_2364 0.69 +1.3
623,454 - Ac3H11_2364 0.69 -1.6
623,454 - Ac3H11_2364 0.69 +1.6
623,605 + Ac3H11_2364 0.76 -1.2
623,605 + Ac3H11_2364 0.76 +0.8
623,605 + Ac3H11_2364 0.76 +1.2
623,605 + Ac3H11_2364 0.76 -0.6
623,606 - Ac3H11_2364 0.76 -1.4
623,606 - Ac3H11_2364 0.76 +1.0
623,606 - Ac3H11_2364 0.76 -0.3
623,838 - Ac3H11_2364 0.86 +0.1
623,838 - Ac3H11_2364 0.86 +2.5
623,838 - Ac3H11_2364 0.86 +0.7
623,868 - Ac3H11_2364 0.88 -0.4
623,899 + Ac3H11_2364 0.89 +0.2
623,900 - Ac3H11_2364 0.89 -0.3
623,900 - Ac3H11_2364 0.89 +2.1
623,969 + -0.5
623,969 + -0.4
623,969 + -0.0
623,969 + +0.4
623,969 + -0.9
623,970 - +0.7
623,970 - -2.3
623,970 - -1.4
623,970 - +0.6
623,993 + +0.4
624,059 + +0.4
624,059 + -2.4
624,059 + +0.9
624,059 + +0.3
624,059 + -0.9
624,060 - +0.2
624,060 - +0.3
624,071 + +1.6
624,072 - +0.3
624,072 - -2.1
624,489 - Ac3H11_2365 0.12 +1.4
624,836 + Ac3H11_2365 0.33 +0.4
624,836 + Ac3H11_2365 0.33 +0.9
624,837 - Ac3H11_2365 0.33 +0.4
624,837 - Ac3H11_2365 0.33 -0.2
624,939 - Ac3H11_2365 0.40 -0.8
624,939 - Ac3H11_2365 0.40 -0.1
624,975 - Ac3H11_2365 0.42 -1.3
625,040 + Ac3H11_2365 0.46 +0.5
625,041 - Ac3H11_2365 0.46 -0.9

Or see this region's nucleotide sequence