Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_154

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_153 and Ac3H11_154 are separated by 106 nucleotidesAc3H11_154 and Ac3H11_155 are separated by 38 nucleotides Ac3H11_153 - Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), contradiction in experimental data (see Annotation), at 36,904 to 40,548 _153 Ac3H11_154 - TRAP transporter solute receptor, unknown substrate 5, at 40,655 to 41,620 _154 Ac3H11_155 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5, at 41,659 to 42,957 _155 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2 3at 39.894 kb on - strand, within Ac3H11_153at 39.894 kb on - strand, within Ac3H11_153at 39.894 kb on - strand, within Ac3H11_153at 40.173 kb on - strand, within Ac3H11_153at 40.192 kb on + strandat 40.193 kb on - strandat 40.193 kb on - strandat 40.193 kb on - strandat 40.193 kb on - strandat 40.193 kb on - strandat 40.573 kb on - strandat 40.573 kb on - strandat 40.656 kb on + strandat 40.656 kb on + strandat 40.656 kb on + strandat 40.668 kb on + strandat 40.669 kb on - strandat 40.968 kb on + strand, within Ac3H11_154at 40.969 kb on - strand, within Ac3H11_154at 40.969 kb on - strand, within Ac3H11_154at 41.133 kb on + strand, within Ac3H11_154at 41.133 kb on + strand, within Ac3H11_154at 41.134 kb on - strand, within Ac3H11_154at 41.220 kb on + strand, within Ac3H11_154at 41.220 kb on + strand, within Ac3H11_154at 41.221 kb on - strand, within Ac3H11_154at 41.708 kb on + strandat 41.709 kb on - strandat 42.116 kb on + strand, within Ac3H11_155at 42.117 kb on - strand, within Ac3H11_155at 42.245 kb on + strand, within Ac3H11_155at 42.246 kb on - strand, within Ac3H11_155at 42.246 kb on - strand, within Ac3H11_155at 42.246 kb on - strand, within Ac3H11_155at 42.305 kb on + strand, within Ac3H11_155at 42.383 kb on + strand, within Ac3H11_155at 42.384 kb on - strand, within Ac3H11_155

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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39,894 - Ac3H11_153 0.82 -0.6
39,894 - Ac3H11_153 0.82 -1.4
39,894 - Ac3H11_153 0.82 +3.3
40,173 - Ac3H11_153 0.90 -0.1
40,192 + +0.4
40,193 - -1.6
40,193 - -1.5
40,193 - -0.1
40,193 - +0.7
40,193 - +0.6
40,573 - +0.7
40,573 - -1.8
40,656 + +0.9
40,656 + -0.0
40,656 + -0.1
40,668 + +0.2
40,669 - -2.2
40,968 + Ac3H11_154 0.32 +1.3
40,969 - Ac3H11_154 0.33 -0.1
40,969 - Ac3H11_154 0.33 -0.4
41,133 + Ac3H11_154 0.49 -0.6
41,133 + Ac3H11_154 0.49 -0.7
41,134 - Ac3H11_154 0.50 +0.6
41,220 + Ac3H11_154 0.58 -0.1
41,220 + Ac3H11_154 0.58 +0.0
41,221 - Ac3H11_154 0.59 +0.2
41,708 + -0.9
41,709 - +0.4
42,116 + Ac3H11_155 0.35 +0.7
42,117 - Ac3H11_155 0.35 +0.2
42,245 + Ac3H11_155 0.45 -0.1
42,246 - Ac3H11_155 0.45 +0.4
42,246 - Ac3H11_155 0.45 -0.4
42,246 - Ac3H11_155 0.45 +0.7
42,305 + Ac3H11_155 0.50 +2.4
42,383 + Ac3H11_155 0.56 -1.7
42,384 - Ac3H11_155 0.56 +0.3

Or see this region's nucleotide sequence