Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1399

Experiment: inner cut, R2A soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1398 and Ac3H11_1399 are separated by 320 nucleotidesAc3H11_1399 and Ac3H11_1400 are separated by 201 nucleotides Ac3H11_1398 - Flagellin protein FlaB, at 87,209 to 88,693 _1398 Ac3H11_1399 - Flagellin protein FlaB, at 89,014 to 90,501 _1399 Ac3H11_1400 - Flagellar hook-associated protein FliD, at 90,703 to 92,136 _1400 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 88.078 kb on - strand, within Ac3H11_1398at 88.188 kb on + strand, within Ac3H11_1398at 88.188 kb on + strand, within Ac3H11_1398at 88.188 kb on + strand, within Ac3H11_1398at 88.189 kb on - strand, within Ac3H11_1398at 88.189 kb on - strand, within Ac3H11_1398at 88.189 kb on - strand, within Ac3H11_1398at 88.189 kb on - strand, within Ac3H11_1398at 88.189 kb on - strand, within Ac3H11_1398at 88.430 kb on + strand, within Ac3H11_1398at 88.669 kb on + strandat 88.670 kb on - strandat 88.670 kb on - strandat 88.675 kb on + strandat 88.675 kb on + strandat 88.675 kb on + strandat 88.675 kb on + strandat 88.676 kb on - strandat 88.676 kb on - strandat 88.676 kb on - strandat 88.676 kb on - strandat 88.805 kb on + strandat 88.983 kb on + strandat 88.983 kb on + strandat 88.984 kb on - strandat 88.984 kb on - strandat 89.130 kb on + strandat 89.131 kb on - strandat 89.226 kb on + strand, within Ac3H11_1399at 89.226 kb on + strand, within Ac3H11_1399at 89.227 kb on - strand, within Ac3H11_1399at 89.518 kb on + strand, within Ac3H11_1399at 89.518 kb on + strand, within Ac3H11_1399at 89.518 kb on + strand, within Ac3H11_1399at 89.629 kb on + strand, within Ac3H11_1399at 89.776 kb on + strand, within Ac3H11_1399at 89.776 kb on + strand, within Ac3H11_1399at 89.776 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.109 kb on + strand, within Ac3H11_1399at 90.110 kb on - strand, within Ac3H11_1399at 90.110 kb on - strand, within Ac3H11_1399at 90.110 kb on - strand, within Ac3H11_1399at 90.110 kb on - strand, within Ac3H11_1399at 90.442 kb on - strandat 90.500 kb on - strandat 90.500 kb on - strandat 90.617 kb on + strandat 90.617 kb on + strandat 90.618 kb on - strandat 90.640 kb on + strandat 90.640 kb on + strandat 90.640 kb on + strandat 90.641 kb on - strandat 90.641 kb on - strandat 90.641 kb on - strandat 90.722 kb on + strandat 90.722 kb on + strandat 90.722 kb on + strandat 90.722 kb on + strandat 90.722 kb on + strandat 90.722 kb on + strandat 90.723 kb on - strandat 90.723 kb on - strandat 90.723 kb on - strandat 90.836 kb on + strandat 90.836 kb on + strandat 90.836 kb on + strandat 90.836 kb on + strandat 90.836 kb on + strandat 90.836 kb on + strandat 90.836 kb on + strandat 90.836 kb on + strandat 90.836 kb on + strandat 90.837 kb on - strandat 90.837 kb on - strandat 90.837 kb on - strandat 90.837 kb on - strandat 90.837 kb on - strandat 90.837 kb on - strandat 90.837 kb on - strandat 90.837 kb on - strandat 90.837 kb on - strandat 90.837 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
remove
88,078 - Ac3H11_1398 0.59 +0.3
88,188 + Ac3H11_1398 0.66 +0.9
88,188 + Ac3H11_1398 0.66 -0.6
88,188 + Ac3H11_1398 0.66 +1.0
88,189 - Ac3H11_1398 0.66 +1.8
88,189 - Ac3H11_1398 0.66 -0.2
88,189 - Ac3H11_1398 0.66 -0.1
88,189 - Ac3H11_1398 0.66 +0.2
88,189 - Ac3H11_1398 0.66 +0.6
88,430 + Ac3H11_1398 0.82 -0.6
88,669 + -0.4
88,670 - -0.5
88,670 - +0.4
88,675 + -0.2
88,675 + -0.3
88,675 + -1.8
88,675 + +0.3
88,676 - -0.0
88,676 - -0.5
88,676 - -0.5
88,676 - -0.8
88,805 + -0.3
88,983 + +2.9
88,983 + +3.5
88,984 - +1.6
88,984 - +1.8
89,130 + +1.1
89,131 - +0.7
89,226 + Ac3H11_1399 0.14 -1.3
89,226 + Ac3H11_1399 0.14 +0.9
89,227 - Ac3H11_1399 0.14 -0.6
89,518 + Ac3H11_1399 0.34 +0.7
89,518 + Ac3H11_1399 0.34 -1.8
89,518 + Ac3H11_1399 0.34 -1.1
89,629 + Ac3H11_1399 0.41 +0.2
89,776 + Ac3H11_1399 0.51 -2.3
89,776 + Ac3H11_1399 0.51 +0.6
89,776 + Ac3H11_1399 0.51 -3.0
90,109 + Ac3H11_1399 0.74 -0.4
90,109 + Ac3H11_1399 0.74 -0.2
90,109 + Ac3H11_1399 0.74 +1.7
90,109 + Ac3H11_1399 0.74 +1.8
90,109 + Ac3H11_1399 0.74 -1.6
90,109 + Ac3H11_1399 0.74 -1.0
90,109 + Ac3H11_1399 0.74 -0.9
90,109 + Ac3H11_1399 0.74 -1.7
90,109 + Ac3H11_1399 0.74 +0.7
90,109 + Ac3H11_1399 0.74 -1.0
90,109 + Ac3H11_1399 0.74 -1.3
90,109 + Ac3H11_1399 0.74 -0.2
90,110 - Ac3H11_1399 0.74 +0.6
90,110 - Ac3H11_1399 0.74 -0.6
90,110 - Ac3H11_1399 0.74 -0.9
90,110 - Ac3H11_1399 0.74 -0.7
90,442 - +0.7
90,500 - +0.9
90,500 - +0.3
90,617 + +1.6
90,617 + -0.0
90,618 - +3.6
90,640 + -0.1
90,640 + +0.5
90,640 + +0.5
90,641 - +1.5
90,641 - -0.7
90,641 - -0.4
90,722 + -2.1
90,722 + +0.4
90,722 + +1.6
90,722 + +1.8
90,722 + +0.6
90,722 + +0.8
90,723 - +0.5
90,723 - -2.1
90,723 - -0.0
90,836 + -0.1
90,836 + -1.1
90,836 + +1.4
90,836 + +1.6
90,836 + -0.7
90,836 + -1.1
90,836 + -0.2
90,836 + +0.2
90,836 + -1.2
90,837 - +0.8
90,837 - -1.4
90,837 - -1.1
90,837 - -1.0
90,837 - +0.4
90,837 - +2.0
90,837 - -0.7
90,837 - -1.8
90,837 - +2.2
90,837 - +0.1

Or see this region's nucleotide sequence