Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26170 and AO353_26175 are separated by 2 nucleotides AO353_26175 and AO353_26180 are separated by 9 nucleotides AO353_26180 and AO353_26185 overlap by 1 nucleotides
AO353_26170: AO353_26170 - hydrolase Nlp/P60, at 5,758,298 to 5,759,062
_26170
AO353_26175: AO353_26175 - phage tail protein, at 5,759,065 to 5,759,814
_26175
AO353_26180: AO353_26180 - phage tail protein, at 5,759,824 to 5,760,162
_26180
AO353_26185: AO353_26185 - phage tail protein, at 5,760,162 to 5,763,419
_26185
Position (kb) 5759
5760
5761 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5758.862 kb on + strand, within AO353_26170 at 5758.959 kb on + strand, within AO353_26170 at 5758.960 kb on - strand, within AO353_26170 at 5758.962 kb on + strand, within AO353_26170 at 5758.962 kb on + strand, within AO353_26170 at 5758.962 kb on + strand, within AO353_26170 at 5758.962 kb on + strand, within AO353_26170 at 5758.962 kb on + strand, within AO353_26170 at 5758.962 kb on + strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5758.963 kb on - strand, within AO353_26170 at 5759.036 kb on + strand at 5759.139 kb on + strand at 5759.139 kb on + strand at 5759.140 kb on - strand, within AO353_26175 at 5759.213 kb on + strand, within AO353_26175 at 5759.213 kb on + strand, within AO353_26175 at 5759.214 kb on - strand, within AO353_26175 at 5759.214 kb on - strand, within AO353_26175 at 5759.257 kb on - strand, within AO353_26175 at 5759.375 kb on + strand, within AO353_26175 at 5759.375 kb on + strand, within AO353_26175 at 5759.375 kb on + strand, within AO353_26175 at 5759.375 kb on + strand, within AO353_26175 at 5759.376 kb on - strand, within AO353_26175 at 5759.376 kb on - strand, within AO353_26175 at 5759.376 kb on - strand, within AO353_26175 at 5759.376 kb on - strand, within AO353_26175 at 5759.376 kb on - strand, within AO353_26175 at 5759.447 kb on + strand, within AO353_26175 at 5759.448 kb on - strand, within AO353_26175 at 5759.448 kb on - strand, within AO353_26175 at 5759.448 kb on - strand, within AO353_26175 at 5759.448 kb on - strand, within AO353_26175 at 5759.488 kb on + strand, within AO353_26175 at 5759.488 kb on + strand, within AO353_26175 at 5759.488 kb on + strand, within AO353_26175 at 5759.489 kb on - strand, within AO353_26175 at 5759.489 kb on - strand, within AO353_26175 at 5759.489 kb on - strand, within AO353_26175 at 5759.529 kb on + strand, within AO353_26175 at 5759.615 kb on + strand, within AO353_26175 at 5759.615 kb on + strand, within AO353_26175 at 5759.616 kb on - strand, within AO353_26175 at 5759.785 kb on + strand at 5759.785 kb on + strand at 5759.786 kb on - strand at 5759.814 kb on + strand at 5759.814 kb on + strand at 5759.815 kb on - strand at 5759.815 kb on - strand at 5759.815 kb on - strand at 5759.815 kb on - strand at 5759.815 kb on - strand at 5759.815 kb on - strand at 5759.815 kb on - strand at 5759.815 kb on - strand at 5759.825 kb on + strand at 5759.863 kb on - strand, within AO353_26180 at 5759.992 kb on + strand, within AO353_26180 at 5759.993 kb on - strand, within AO353_26180 at 5760.014 kb on + strand, within AO353_26180 at 5760.014 kb on + strand, within AO353_26180 at 5760.015 kb on - strand, within AO353_26180 at 5760.015 kb on - strand, within AO353_26180 at 5760.015 kb on - strand, within AO353_26180 at 5760.039 kb on + strand, within AO353_26180 at 5760.040 kb on - strand, within AO353_26180 at 5760.040 kb on - strand, within AO353_26180 at 5760.072 kb on - strand, within AO353_26180 at 5760.257 kb on + strand at 5760.258 kb on - strand at 5760.258 kb on - strand at 5760.346 kb on + strand at 5760.346 kb on + strand at 5760.346 kb on + strand at 5760.347 kb on - strand at 5760.347 kb on - strand at 5760.347 kb on - strand at 5760.347 kb on - strand at 5760.350 kb on + strand at 5760.350 kb on + strand at 5760.350 kb on + strand at 5760.350 kb on + strand at 5760.351 kb on - strand at 5760.351 kb on - strand at 5760.392 kb on + strand at 5760.445 kb on + strand at 5760.445 kb on + strand at 5760.496 kb on + strand, within AO353_26185 at 5760.497 kb on - strand, within AO353_26185 at 5760.497 kb on - strand, within AO353_26185 at 5760.497 kb on - strand, within AO353_26185 at 5760.655 kb on + strand, within AO353_26185 at 5760.655 kb on + strand, within AO353_26185 at 5760.655 kb on + strand, within AO353_26185 at 5760.655 kb on + strand, within AO353_26185 at 5760.656 kb on - strand, within AO353_26185 at 5760.656 kb on - strand, within AO353_26185 at 5760.868 kb on + strand, within AO353_26185 at 5760.869 kb on - strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.931 kb on + strand, within AO353_26185 at 5760.932 kb on - strand, within AO353_26185 at 5760.932 kb on - strand, within AO353_26185 at 5760.932 kb on - strand, within AO353_26185 at 5760.932 kb on - strand, within AO353_26185 at 5760.932 kb on - strand, within AO353_26185
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 5,758,862 + AO353_26170 0.74 -0.7 5,758,959 + AO353_26170 0.86 +0.9 5,758,960 - AO353_26170 0.87 +0.8 5,758,962 + AO353_26170 0.87 -1.0 5,758,962 + AO353_26170 0.87 -0.6 5,758,962 + AO353_26170 0.87 +0.1 5,758,962 + AO353_26170 0.87 -0.5 5,758,962 + AO353_26170 0.87 +0.0 5,758,962 + AO353_26170 0.87 -0.8 5,758,963 - AO353_26170 0.87 +0.7 5,758,963 - AO353_26170 0.87 -0.7 5,758,963 - AO353_26170 0.87 -0.8 5,758,963 - AO353_26170 0.87 -1.0 5,758,963 - AO353_26170 0.87 +0.1 5,758,963 - AO353_26170 0.87 +0.7 5,758,963 - AO353_26170 0.87 -0.3 5,758,963 - AO353_26170 0.87 +0.0 5,758,963 - AO353_26170 0.87 -0.2 5,759,036 + +0.6 5,759,139 + -1.3 5,759,139 + -1.6 5,759,140 - AO353_26175 0.10 +0.0 5,759,213 + AO353_26175 0.20 +0.2 5,759,213 + AO353_26175 0.20 -0.3 5,759,214 - AO353_26175 0.20 +0.7 5,759,214 - AO353_26175 0.20 -1.5 5,759,257 - AO353_26175 0.26 -2.2 5,759,375 + AO353_26175 0.41 -2.0 5,759,375 + AO353_26175 0.41 -0.1 5,759,375 + AO353_26175 0.41 -0.4 5,759,375 + AO353_26175 0.41 +0.9 5,759,376 - AO353_26175 0.41 -1.4 5,759,376 - AO353_26175 0.41 +0.5 5,759,376 - AO353_26175 0.41 +1.7 5,759,376 - AO353_26175 0.41 +0.6 5,759,376 - AO353_26175 0.41 +0.3 5,759,447 + AO353_26175 0.51 -1.5 5,759,448 - AO353_26175 0.51 +0.1 5,759,448 - AO353_26175 0.51 -0.1 5,759,448 - AO353_26175 0.51 +0.0 5,759,448 - AO353_26175 0.51 -0.5 5,759,488 + AO353_26175 0.56 +0.1 5,759,488 + AO353_26175 0.56 -2.0 5,759,488 + AO353_26175 0.56 +1.2 5,759,489 - AO353_26175 0.57 +0.2 5,759,489 - AO353_26175 0.57 -0.7 5,759,489 - AO353_26175 0.57 +0.2 5,759,529 + AO353_26175 0.62 +0.4 5,759,615 + AO353_26175 0.73 +1.6 5,759,615 + AO353_26175 0.73 -1.5 5,759,616 - AO353_26175 0.73 +0.2 5,759,785 + +0.4 5,759,785 + -0.6 5,759,786 - +1.2 5,759,814 + -0.9 5,759,814 + +1.0 5,759,815 - +0.2 5,759,815 - -0.8 5,759,815 - +0.2 5,759,815 - -2.5 5,759,815 - +0.6 5,759,815 - -0.8 5,759,815 - -1.4 5,759,815 - -1.5 5,759,825 + +0.1 5,759,863 - AO353_26180 0.12 -0.4 5,759,992 + AO353_26180 0.50 -0.8 5,759,993 - AO353_26180 0.50 -1.3 5,760,014 + AO353_26180 0.56 -1.1 5,760,014 + AO353_26180 0.56 +0.2 5,760,015 - AO353_26180 0.56 -1.4 5,760,015 - AO353_26180 0.56 -0.6 5,760,015 - AO353_26180 0.56 -2.1 5,760,039 + AO353_26180 0.63 -1.4 5,760,040 - AO353_26180 0.64 -0.2 5,760,040 - AO353_26180 0.64 -2.0 5,760,072 - AO353_26180 0.73 -0.6 5,760,257 + +0.5 5,760,258 - -2.1 5,760,258 - +0.2 5,760,346 + -0.1 5,760,346 + +0.1 5,760,346 + +1.1 5,760,347 - -0.6 5,760,347 - +0.5 5,760,347 - +1.6 5,760,347 - -0.4 5,760,350 + +2.0 5,760,350 + -0.4 5,760,350 + +0.2 5,760,350 + +0.7 5,760,351 - +0.6 5,760,351 - +0.2 5,760,392 + +1.4 5,760,445 + -0.4 5,760,445 + +1.1 5,760,496 + AO353_26185 0.10 -0.2 5,760,497 - AO353_26185 0.10 +0.6 5,760,497 - AO353_26185 0.10 +0.4 5,760,497 - AO353_26185 0.10 +0.5 5,760,655 + AO353_26185 0.15 -0.1 5,760,655 + AO353_26185 0.15 +1.2 5,760,655 + AO353_26185 0.15 +0.9 5,760,655 + AO353_26185 0.15 -1.3 5,760,656 - AO353_26185 0.15 -0.2 5,760,656 - AO353_26185 0.15 +0.8 5,760,868 + AO353_26185 0.22 +0.4 5,760,869 - AO353_26185 0.22 -1.4 5,760,931 + AO353_26185 0.24 -0.4 5,760,931 + AO353_26185 0.24 -0.6 5,760,931 + AO353_26185 0.24 -0.4 5,760,931 + AO353_26185 0.24 +1.0 5,760,931 + AO353_26185 0.24 -1.1 5,760,931 + AO353_26185 0.24 +1.2 5,760,931 + AO353_26185 0.24 +0.8 5,760,931 + AO353_26185 0.24 +0.3 5,760,931 + AO353_26185 0.24 +0.4 5,760,931 + AO353_26185 0.24 +1.3 5,760,932 - AO353_26185 0.24 -0.1 5,760,932 - AO353_26185 0.24 -0.4 5,760,932 - AO353_26185 0.24 +0.8 5,760,932 - AO353_26185 0.24 -0.7 5,760,932 - AO353_26185 0.24 -0.8
Or see this region's nucleotide sequence