Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10480

Experiment: D-Cycloserine 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_10475 and AO353_10480 are separated by 20 nucleotidesAO353_10480 and AO353_10485 are separated by 4 nucleotides AO353_10475: AO353_10475 - DNA polymerase III subunit beta, at 2,295,586 to 2,296,689 _10475 AO353_10480: AO353_10480 - recombinase RecF, at 2,296,710 to 2,297,813 _10480 AO353_10485: AO353_10485 - DNA gyrase subunit B, at 2,297,818 to 2,300,235 _10485 Position (kb) 2296 2297 2298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2296.687 kb on + strandat 2296.687 kb on + strandat 2296.687 kb on + strandat 2296.688 kb on - strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.707 kb on + strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.708 kb on - strandat 2296.787 kb on + strandat 2296.794 kb on + strandat 2296.869 kb on - strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.882 kb on + strand, within AO353_10480at 2296.883 kb on - strand, within AO353_10480at 2296.883 kb on - strand, within AO353_10480at 2296.896 kb on + strand, within AO353_10480at 2296.897 kb on - strand, within AO353_10480at 2296.906 kb on + strand, within AO353_10480at 2297.216 kb on + strand, within AO353_10480at 2297.216 kb on + strand, within AO353_10480at 2297.216 kb on + strand, within AO353_10480at 2297.216 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.298 kb on + strand, within AO353_10480at 2297.300 kb on + strand, within AO353_10480at 2297.300 kb on + strand, within AO353_10480at 2297.300 kb on + strand, within AO353_10480at 2297.300 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.369 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.373 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.606 kb on + strand, within AO353_10480at 2297.610 kb on + strand, within AO353_10480at 2297.610 kb on + strand, within AO353_10480at 2297.610 kb on + strand, within AO353_10480at 2297.610 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.683 kb on + strand, within AO353_10480at 2297.699 kb on + strand, within AO353_10480at 2297.699 kb on + strand, within AO353_10480at 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.710 kb on + strandat 2297.722 kb on + strandat 2297.722 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml
remove
2,296,687 + -0.5
2,296,687 + +0.1
2,296,687 + -0.9
2,296,688 - -1.1
2,296,707 + +0.6
2,296,707 + -1.0
2,296,707 + +0.6
2,296,707 + -1.2
2,296,707 + +1.0
2,296,707 + -0.8
2,296,707 + -0.3
2,296,708 - -2.1
2,296,708 - +0.2
2,296,708 - +1.1
2,296,708 - -1.2
2,296,708 - -1.4
2,296,708 - -0.0
2,296,708 - -0.9
2,296,708 - -0.1
2,296,708 - -1.7
2,296,708 - -0.9
2,296,787 + -0.9
2,296,794 + +1.1
2,296,869 - AO353_10480 0.14 -1.3
2,296,882 + AO353_10480 0.16 -0.4
2,296,882 + AO353_10480 0.16 -0.0
2,296,882 + AO353_10480 0.16 -0.9
2,296,882 + AO353_10480 0.16 -1.6
2,296,882 + AO353_10480 0.16 +1.3
2,296,882 + AO353_10480 0.16 -0.9
2,296,882 + AO353_10480 0.16 -0.9
2,296,882 + AO353_10480 0.16 -0.9
2,296,883 - AO353_10480 0.16 -0.0
2,296,883 - AO353_10480 0.16 -1.6
2,296,896 + AO353_10480 0.17 -0.7
2,296,897 - AO353_10480 0.17 +0.0
2,296,906 + AO353_10480 0.18 -0.4
2,297,216 + AO353_10480 0.46 +1.0
2,297,216 + AO353_10480 0.46 -0.5
2,297,216 + AO353_10480 0.46 -0.6
2,297,216 + AO353_10480 0.46 +0.2
2,297,298 + AO353_10480 0.53 -0.8
2,297,298 + AO353_10480 0.53 -2.2
2,297,298 + AO353_10480 0.53 -0.6
2,297,298 + AO353_10480 0.53 -0.9
2,297,298 + AO353_10480 0.53 -1.2
2,297,298 + AO353_10480 0.53 +1.1
2,297,298 + AO353_10480 0.53 +0.7
2,297,300 + AO353_10480 0.53 -0.3
2,297,300 + AO353_10480 0.53 +1.8
2,297,300 + AO353_10480 0.53 +0.6
2,297,300 + AO353_10480 0.53 -0.4
2,297,369 + AO353_10480 0.60 +0.1
2,297,369 + AO353_10480 0.60 -1.4
2,297,369 + AO353_10480 0.60 -1.2
2,297,369 + AO353_10480 0.60 -1.0
2,297,369 + AO353_10480 0.60 -0.2
2,297,369 + AO353_10480 0.60 -0.7
2,297,369 + AO353_10480 0.60 +0.5
2,297,369 + AO353_10480 0.60 +0.6
2,297,369 + AO353_10480 0.60 -1.0
2,297,369 + AO353_10480 0.60 +1.4
2,297,373 + AO353_10480 0.60 -0.0
2,297,373 + AO353_10480 0.60 -0.9
2,297,373 + AO353_10480 0.60 -0.6
2,297,373 + AO353_10480 0.60 -1.2
2,297,373 + AO353_10480 0.60 +0.1
2,297,373 + AO353_10480 0.60 -1.2
2,297,373 + AO353_10480 0.60 -0.4
2,297,373 + AO353_10480 0.60 -1.4
2,297,373 + AO353_10480 0.60 +1.1
2,297,373 + AO353_10480 0.60 -1.9
2,297,606 + AO353_10480 0.81 -0.9
2,297,606 + AO353_10480 0.81 -0.0
2,297,606 + AO353_10480 0.81 +0.3
2,297,606 + AO353_10480 0.81 -2.2
2,297,606 + AO353_10480 0.81 -0.1
2,297,606 + AO353_10480 0.81 +1.4
2,297,606 + AO353_10480 0.81 -0.7
2,297,606 + AO353_10480 0.81 +0.1
2,297,606 + AO353_10480 0.81 +0.3
2,297,610 + AO353_10480 0.82 -0.3
2,297,610 + AO353_10480 0.82 -0.7
2,297,610 + AO353_10480 0.82 -1.2
2,297,610 + AO353_10480 0.82 -0.7
2,297,683 + AO353_10480 0.88 -0.7
2,297,683 + AO353_10480 0.88 -1.3
2,297,683 + AO353_10480 0.88 -3.0
2,297,683 + AO353_10480 0.88 +0.4
2,297,683 + AO353_10480 0.88 -1.4
2,297,683 + AO353_10480 0.88 +0.9
2,297,683 + AO353_10480 0.88 -0.6
2,297,683 + AO353_10480 0.88 -1.7
2,297,699 + AO353_10480 0.90 +0.3
2,297,699 + AO353_10480 0.90 -1.0
2,297,710 + -1.2
2,297,710 + +2.1
2,297,710 + -1.3
2,297,710 + +0.5
2,297,710 + -3.2
2,297,710 + -1.1
2,297,710 + -1.1
2,297,710 + +1.1
2,297,710 + -0.2
2,297,710 + -1.4
2,297,710 + -0.9
2,297,710 + -1.4
2,297,710 + -1.9
2,297,710 + +0.7
2,297,722 + -0.9
2,297,722 + -1.3

Or see this region's nucleotide sequence