Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04170 and AO353_04175 are separated by 369 nucleotides AO353_04175 and AO353_04180 are separated by 77 nucleotides
AO353_04170: AO353_04170 - hypothetical protein, at 893,914 to 894,384
_04170
AO353_04175: AO353_04175 - glycerol uptake facilitator GlpF, at 894,754 to 895,605
_04175
AO353_04180: AO353_04180 - glycerol kinase, at 895,683 to 897,188
_04180
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.758 kb on + strand at 893.835 kb on - strand at 893.901 kb on + strand at 893.901 kb on + strand at 893.901 kb on + strand at 893.901 kb on + strand at 893.901 kb on + strand at 893.901 kb on + strand at 893.902 kb on - strand at 893.902 kb on - strand at 893.902 kb on - strand at 893.902 kb on - strand at 893.902 kb on - strand at 893.902 kb on - strand at 894.011 kb on + strand, within AO353_04170 at 894.011 kb on + strand, within AO353_04170 at 894.011 kb on + strand, within AO353_04170 at 894.011 kb on + strand, within AO353_04170 at 894.011 kb on + strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.012 kb on - strand, within AO353_04170 at 894.015 kb on + strand, within AO353_04170 at 894.015 kb on + strand, within AO353_04170 at 894.015 kb on + strand, within AO353_04170 at 894.015 kb on + strand, within AO353_04170 at 894.015 kb on + strand, within AO353_04170 at 894.074 kb on - strand, within AO353_04170 at 894.099 kb on - strand, within AO353_04170 at 894.175 kb on + strand, within AO353_04170 at 894.175 kb on + strand, within AO353_04170 at 894.176 kb on - strand, within AO353_04170 at 894.176 kb on - strand, within AO353_04170 at 894.176 kb on - strand, within AO353_04170 at 894.176 kb on - strand, within AO353_04170 at 894.176 kb on - strand, within AO353_04170 at 894.299 kb on + strand, within AO353_04170 at 894.299 kb on + strand, within AO353_04170 at 894.300 kb on - strand, within AO353_04170 at 894.300 kb on - strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.326 kb on + strand, within AO353_04170 at 894.327 kb on - strand, within AO353_04170 at 894.327 kb on - strand, within AO353_04170 at 894.327 kb on - strand, within AO353_04170 at 894.327 kb on - strand, within AO353_04170 at 894.327 kb on - strand, within AO353_04170 at 894.327 kb on - strand, within AO353_04170 at 894.416 kb on + strand at 894.431 kb on + strand at 894.431 kb on + strand at 894.432 kb on - strand at 894.456 kb on + strand at 894.456 kb on + strand at 894.456 kb on + strand at 894.456 kb on + strand at 894.456 kb on + strand at 894.457 kb on - strand at 894.457 kb on - strand at 894.457 kb on - strand at 894.457 kb on - strand at 894.483 kb on + strand at 894.483 kb on + strand at 894.484 kb on - strand at 894.549 kb on + strand at 894.549 kb on + strand at 894.549 kb on + strand at 894.549 kb on + strand at 894.550 kb on - strand at 894.550 kb on - strand at 894.555 kb on - strand at 894.555 kb on - strand at 894.558 kb on + strand at 894.605 kb on + strand at 894.607 kb on + strand at 894.608 kb on - strand at 894.625 kb on + strand at 894.625 kb on + strand at 894.628 kb on + strand at 894.628 kb on + strand at 894.628 kb on + strand at 894.628 kb on + strand at 894.628 kb on + strand at 894.628 kb on + strand at 894.628 kb on + strand at 894.628 kb on + strand at 894.629 kb on - strand at 894.629 kb on - strand at 894.629 kb on - strand at 894.629 kb on - strand at 894.629 kb on - strand at 894.629 kb on - strand at 894.629 kb on - strand at 894.629 kb on - strand at 894.632 kb on + strand at 894.632 kb on + strand at 894.633 kb on - strand at 894.633 kb on - strand at 894.646 kb on + strand at 894.646 kb on + strand at 894.646 kb on + strand at 894.647 kb on - strand at 894.659 kb on + strand at 894.821 kb on + strand at 894.931 kb on + strand, within AO353_04175 at 894.932 kb on - strand, within AO353_04175 at 894.993 kb on - strand, within AO353_04175 at 895.014 kb on + strand, within AO353_04175 at 895.014 kb on + strand, within AO353_04175 at 895.014 kb on + strand, within AO353_04175 at 895.014 kb on + strand, within AO353_04175 at 895.015 kb on - strand, within AO353_04175 at 895.027 kb on + strand, within AO353_04175 at 895.027 kb on + strand, within AO353_04175 at 895.027 kb on + strand, within AO353_04175 at 895.027 kb on + strand, within AO353_04175 at 895.028 kb on - strand, within AO353_04175 at 895.075 kb on + strand, within AO353_04175 at 895.085 kb on - strand, within AO353_04175 at 895.336 kb on - strand, within AO353_04175 at 895.392 kb on + strand, within AO353_04175 at 895.449 kb on + strand, within AO353_04175 at 895.538 kb on + strand at 895.538 kb on + strand at 895.539 kb on - strand at 895.550 kb on + strand at 895.550 kb on + strand at 895.550 kb on + strand at 895.557 kb on + strand at 895.557 kb on + strand at 895.557 kb on + strand at 895.558 kb on - strand at 895.558 kb on - strand at 895.558 kb on - strand at 895.661 kb on + strand at 895.661 kb on + strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.700 kb on + strand at 895.700 kb on + strand at 895.701 kb on - strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.707 kb on + strand at 895.708 kb on - strand at 895.708 kb on - strand at 895.708 kb on - strand at 895.708 kb on - strand at 895.708 kb on - strand at 895.708 kb on - strand at 895.708 kb on - strand at 895.708 kb on - strand at 895.986 kb on + strand, within AO353_04180 at 895.986 kb on + strand, within AO353_04180 at 895.987 kb on - strand, within AO353_04180 at 895.987 kb on - strand, within AO353_04180 at 895.987 kb on - strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.061 kb on + strand, within AO353_04180 at 896.062 kb on - strand, within AO353_04180 at 896.062 kb on - strand, within AO353_04180 at 896.062 kb on - strand, within AO353_04180 at 896.062 kb on - strand, within AO353_04180 at 896.062 kb on - strand at 896.062 kb on - strand, within AO353_04180 at 896.062 kb on - strand, within AO353_04180 at 896.062 kb on - strand, within AO353_04180 at 896.062 kb on - strand, within AO353_04180 at 896.062 kb on - strand, within AO353_04180 at 896.097 kb on + strand, within AO353_04180 at 896.097 kb on + strand, within AO353_04180 at 896.098 kb on - strand, within AO353_04180 at 896.098 kb on - strand, within AO353_04180 at 896.098 kb on - strand, within AO353_04180 at 896.098 kb on - strand, within AO353_04180 at 896.241 kb on + strand, within AO353_04180 at 896.241 kb on + strand, within AO353_04180 at 896.241 kb on + strand, within AO353_04180 at 896.242 kb on - strand, within AO353_04180 at 896.242 kb on - strand, within AO353_04180 at 896.364 kb on + strand, within AO353_04180 at 896.364 kb on + strand, within AO353_04180 at 896.364 kb on + strand, within AO353_04180 at 896.364 kb on + strand, within AO353_04180 at 896.365 kb on - strand, within AO353_04180 at 896.469 kb on + strand, within AO353_04180 at 896.470 kb on - strand, within AO353_04180 at 896.470 kb on - strand, within AO353_04180 at 896.517 kb on - strand, within AO353_04180 at 896.517 kb on - strand, within AO353_04180 at 896.574 kb on + strand, within AO353_04180 at 896.575 kb on - strand, within AO353_04180 at 896.575 kb on - strand, within AO353_04180
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 893,758 + -0.1 893,835 - +1.0 893,901 + +1.0 893,901 + +1.1 893,901 + +0.4 893,901 + +0.1 893,901 + +0.7 893,901 + -0.7 893,902 - -0.1 893,902 - +0.1 893,902 - +0.4 893,902 - +0.3 893,902 - +0.5 893,902 - +0.7 894,011 + AO353_04170 0.21 +0.1 894,011 + AO353_04170 0.21 -0.9 894,011 + AO353_04170 0.21 -0.2 894,011 + AO353_04170 0.21 +0.9 894,011 + AO353_04170 0.21 -2.4 894,012 - AO353_04170 0.21 +0.4 894,012 - AO353_04170 0.21 -0.9 894,012 - AO353_04170 0.21 +0.7 894,012 - AO353_04170 0.21 +0.1 894,012 - AO353_04170 0.21 +0.2 894,012 - AO353_04170 0.21 +0.2 894,012 - AO353_04170 0.21 -0.5 894,012 - AO353_04170 0.21 +0.1 894,012 - AO353_04170 0.21 -0.1 894,012 - AO353_04170 0.21 +0.3 894,012 - AO353_04170 0.21 +1.3 894,015 + AO353_04170 0.21 +0.3 894,015 + AO353_04170 0.21 +0.8 894,015 + AO353_04170 0.21 -0.2 894,015 + AO353_04170 0.21 +0.7 894,015 + AO353_04170 0.21 -0.0 894,074 - AO353_04170 0.34 +0.3 894,099 - AO353_04170 0.39 -1.3 894,175 + AO353_04170 0.55 -0.2 894,175 + AO353_04170 0.55 -1.0 894,176 - AO353_04170 0.56 +0.1 894,176 - AO353_04170 0.56 -0.9 894,176 - AO353_04170 0.56 -1.0 894,176 - AO353_04170 0.56 +0.1 894,176 - AO353_04170 0.56 +0.8 894,299 + AO353_04170 0.82 -0.6 894,299 + AO353_04170 0.82 +0.7 894,300 - AO353_04170 0.82 +0.7 894,300 - AO353_04170 0.82 +0.7 894,326 + AO353_04170 0.87 +0.0 894,326 + AO353_04170 0.87 +0.0 894,326 + AO353_04170 0.87 +0.5 894,326 + AO353_04170 0.87 +0.5 894,326 + AO353_04170 0.87 -1.1 894,326 + AO353_04170 0.87 +1.1 894,326 + AO353_04170 0.87 +1.2 894,326 + AO353_04170 0.87 +0.1 894,326 + AO353_04170 0.87 -1.0 894,327 - AO353_04170 0.88 +0.7 894,327 - AO353_04170 0.88 -1.3 894,327 - AO353_04170 0.88 +0.7 894,327 - AO353_04170 0.88 -1.8 894,327 - AO353_04170 0.88 +0.8 894,327 - AO353_04170 0.88 +1.2 894,416 + -0.9 894,431 + +0.3 894,431 + -0.3 894,432 - +0.7 894,456 + +1.7 894,456 + +1.0 894,456 + +0.7 894,456 + +1.1 894,456 + -1.6 894,457 - +0.5 894,457 - +0.5 894,457 - +0.2 894,457 - +0.1 894,483 + +1.1 894,483 + -0.9 894,484 - -1.7 894,549 + -0.7 894,549 + +1.2 894,549 + -0.9 894,549 + -0.3 894,550 - -1.2 894,550 - +0.1 894,555 - -0.7 894,555 - -0.1 894,558 + +0.1 894,605 + +0.5 894,607 + -0.6 894,608 - +1.1 894,625 + -0.1 894,625 + -0.2 894,628 + +1.1 894,628 + +0.3 894,628 + +0.3 894,628 + -1.8 894,628 + +0.0 894,628 + -0.4 894,628 + +2.2 894,628 + -1.3 894,629 - +0.1 894,629 - +0.7 894,629 - +0.2 894,629 - -0.0 894,629 - -1.0 894,629 - -0.9 894,629 - -1.8 894,629 - -0.7 894,632 + -0.7 894,632 + -0.6 894,633 - -0.5 894,633 - -0.5 894,646 + -0.2 894,646 + -1.8 894,646 + -1.2 894,647 - +0.7 894,659 + +1.1 894,821 + -0.0 894,931 + AO353_04175 0.21 -0.3 894,932 - AO353_04175 0.21 -2.0 894,993 - AO353_04175 0.28 +0.1 895,014 + AO353_04175 0.31 +0.3 895,014 + AO353_04175 0.31 +2.1 895,014 + AO353_04175 0.31 +0.2 895,014 + AO353_04175 0.31 -0.9 895,015 - AO353_04175 0.31 -1.7 895,027 + AO353_04175 0.32 -1.2 895,027 + AO353_04175 0.32 -1.5 895,027 + AO353_04175 0.32 -0.3 895,027 + AO353_04175 0.32 -1.5 895,028 - AO353_04175 0.32 -0.3 895,075 + AO353_04175 0.38 -0.9 895,085 - AO353_04175 0.39 -0.3 895,336 - AO353_04175 0.68 -0.7 895,392 + AO353_04175 0.75 -0.3 895,449 + AO353_04175 0.82 -1.2 895,538 + -0.2 895,538 + -0.9 895,539 - +0.7 895,550 + -0.7 895,550 + +0.1 895,550 + -1.2 895,557 + -0.2 895,557 + -0.3 895,557 + -0.5 895,558 - -1.3 895,558 - -1.5 895,558 - -0.9 895,661 + +0.1 895,661 + -0.1 895,662 - -0.3 895,662 - -0.8 895,662 - -0.7 895,662 - -0.3 895,662 - -1.2 895,700 + +1.7 895,700 + -0.3 895,701 - +0.8 895,707 + +0.1 895,707 + -0.0 895,707 + -0.4 895,707 + -0.2 895,707 + +0.2 895,707 + -0.8 895,707 + +2.1 895,707 + -1.9 895,707 + +0.7 895,707 + -0.3 895,707 + -0.6 895,708 - -0.8 895,708 - -0.8 895,708 - +0.1 895,708 - -1.0 895,708 - +1.2 895,708 - -1.2 895,708 - -0.3 895,708 - +0.2 895,986 + AO353_04180 0.20 -1.5 895,986 + AO353_04180 0.20 -0.5 895,987 - AO353_04180 0.20 -1.5 895,987 - AO353_04180 0.20 -1.2 895,987 - AO353_04180 0.20 +0.3 896,061 + AO353_04180 0.25 -0.3 896,061 + AO353_04180 0.25 +1.4 896,061 + AO353_04180 0.25 -1.6 896,061 + AO353_04180 0.25 -0.9 896,061 + AO353_04180 0.25 +0.5 896,061 + AO353_04180 0.25 -0.8 896,061 + AO353_04180 0.25 +0.8 896,061 + AO353_04180 0.25 +0.2 896,061 + AO353_04180 0.25 -2.4 896,061 + AO353_04180 0.25 +0.1 896,061 + AO353_04180 0.25 -0.7 896,061 + AO353_04180 0.25 -0.9 896,062 - AO353_04180 0.25 +1.1 896,062 - AO353_04180 0.25 -1.9 896,062 - AO353_04180 0.25 -0.7 896,062 - AO353_04180 0.25 -1.4 896,062 - +0.7 896,062 - AO353_04180 0.25 -1.7 896,062 - AO353_04180 0.25 +0.8 896,062 - AO353_04180 0.25 -1.2 896,062 - AO353_04180 0.25 +0.2 896,062 - AO353_04180 0.25 +0.2 896,097 + AO353_04180 0.27 +1.3 896,097 + AO353_04180 0.27 -1.5 896,098 - AO353_04180 0.28 +0.1 896,098 - AO353_04180 0.28 -0.2 896,098 - AO353_04180 0.28 -1.3 896,098 - AO353_04180 0.28 -0.7 896,241 + AO353_04180 0.37 -0.5 896,241 + AO353_04180 0.37 +1.7 896,241 + AO353_04180 0.37 -0.9 896,242 - AO353_04180 0.37 +1.7 896,242 - AO353_04180 0.37 -0.6 896,364 + AO353_04180 0.45 -1.5 896,364 + AO353_04180 0.45 -0.3 896,364 + AO353_04180 0.45 -0.8 896,364 + AO353_04180 0.45 +1.1 896,365 - AO353_04180 0.45 -0.2 896,469 + AO353_04180 0.52 -1.7 896,470 - AO353_04180 0.52 -1.1 896,470 - AO353_04180 0.52 -0.9 896,517 - AO353_04180 0.55 -0.5 896,517 - AO353_04180 0.55 -0.7 896,574 + AO353_04180 0.59 +0.1 896,575 - AO353_04180 0.59 +0.1 896,575 - AO353_04180 0.59 -1.2
Or see this region's nucleotide sequence