Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03410

Experiment: D-Cycloserine 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03405 and AO353_03410 overlap by 11 nucleotidesAO353_03410 and AO353_03415 are separated by 206 nucleotides AO353_03405: AO353_03405 - histidine kinase, at 725,463 to 726,926 _03405 AO353_03410: AO353_03410 - chemotaxis protein CheY, at 726,916 to 727,647 _03410 AO353_03415: AO353_03415 - glucokinase, at 727,854 to 728,804 _03415 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1 2at 726.113 kb on + strand, within AO353_03405at 726.114 kb on - strand, within AO353_03405at 726.251 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.329 kb on + strand, within AO353_03405at 726.331 kb on + strand, within AO353_03405at 726.332 kb on - strand, within AO353_03405at 726.358 kb on + strand, within AO353_03405at 726.358 kb on + strand, within AO353_03405at 726.358 kb on + strand, within AO353_03405at 726.358 kb on + strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.359 kb on - strand, within AO353_03405at 726.434 kb on - strand, within AO353_03405at 726.434 kb on - strand, within AO353_03405at 726.521 kb on + strand, within AO353_03405at 726.521 kb on + strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.522 kb on - strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.715 kb on + strand, within AO353_03405at 726.937 kb on + strandat 726.937 kb on + strandat 726.938 kb on - strandat 726.938 kb on - strandat 726.938 kb on - strandat 727.280 kb on - strand, within AO353_03410at 727.280 kb on - strand, within AO353_03410at 727.334 kb on + strand, within AO353_03410at 727.335 kb on - strand, within AO353_03410at 727.577 kb on + strandat 727.577 kb on + strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.578 kb on - strandat 727.597 kb on + strandat 727.597 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.667 kb on + strandat 727.683 kb on + strandat 727.683 kb on + strandat 727.684 kb on - strandat 727.684 kb on - strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.852 kb on + strandat 727.897 kb on + strandat 727.898 kb on - strandat 727.936 kb on + strandat 727.936 kb on + strandat 727.936 kb on + strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 727.937 kb on - strandat 728.029 kb on + strandat 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.029 kb on + strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.030 kb on - strand, within AO353_03415at 728.207 kb on - strand, within AO353_03415at 728.269 kb on + strand, within AO353_03415at 728.269 kb on + strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.270 kb on - strand, within AO353_03415at 728.582 kb on + strand, within AO353_03415at 728.582 kb on + strand, within AO353_03415

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml
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726,113 + AO353_03405 0.44 -1.2
726,114 - AO353_03405 0.44 -0.8
726,251 + AO353_03405 0.54 +1.4
726,329 + AO353_03405 0.59 -0.2
726,329 + AO353_03405 0.59 +0.3
726,329 + AO353_03405 0.59 -0.2
726,329 + AO353_03405 0.59 -0.4
726,329 + AO353_03405 0.59 -2.1
726,331 + AO353_03405 0.59 +0.1
726,332 - AO353_03405 0.59 +1.1
726,358 + AO353_03405 0.61 +0.2
726,358 + AO353_03405 0.61 +0.4
726,358 + AO353_03405 0.61 -1.9
726,358 + AO353_03405 0.61 +0.9
726,359 - AO353_03405 0.61 -1.0
726,359 - AO353_03405 0.61 -0.1
726,359 - AO353_03405 0.61 -0.9
726,359 - AO353_03405 0.61 -0.2
726,359 - AO353_03405 0.61 -0.3
726,434 - AO353_03405 0.66 +1.2
726,434 - AO353_03405 0.66 -0.8
726,521 + AO353_03405 0.72 +0.3
726,521 + AO353_03405 0.72 +0.0
726,522 - AO353_03405 0.72 -0.2
726,522 - AO353_03405 0.72 -0.9
726,522 - AO353_03405 0.72 -0.3
726,522 - AO353_03405 0.72 +0.5
726,522 - AO353_03405 0.72 +1.6
726,522 - AO353_03405 0.72 -2.0
726,715 + AO353_03405 0.86 +1.3
726,715 + AO353_03405 0.86 -0.1
726,715 + AO353_03405 0.86 -0.7
726,715 + AO353_03405 0.86 +0.2
726,715 + AO353_03405 0.86 +0.8
726,715 + AO353_03405 0.86 +0.0
726,937 + -1.0
726,937 + +0.3
726,938 - -1.2
726,938 - -0.4
726,938 - +0.2
727,280 - AO353_03410 0.50 -0.6
727,280 - AO353_03410 0.50 -0.7
727,334 + AO353_03410 0.57 -1.0
727,335 - AO353_03410 0.57 -0.4
727,577 + -1.7
727,577 + +0.0
727,578 - +0.3
727,578 - -0.6
727,578 - +1.3
727,578 - -0.5
727,578 - +0.3
727,578 - +1.8
727,597 + -0.3
727,597 + -0.6
727,667 + +1.0
727,667 + +0.8
727,667 + +1.1
727,667 + +1.1
727,667 + +0.2
727,683 + -0.3
727,683 + -1.6
727,684 - +1.3
727,684 - +0.5
727,852 + +0.6
727,852 + -0.0
727,852 + +0.0
727,852 + -0.2
727,897 + -0.7
727,898 - +0.4
727,936 + -0.1
727,936 + -0.6
727,936 + -0.3
727,937 - +0.5
727,937 - +0.1
727,937 - +2.1
727,937 - -0.1
727,937 - -1.0
727,937 - +0.6
727,937 - +0.6
728,029 + +1.6
728,029 + AO353_03415 0.18 +1.0
728,029 + AO353_03415 0.18 +0.5
728,029 + AO353_03415 0.18 -1.4
728,029 + AO353_03415 0.18 +1.0
728,029 + AO353_03415 0.18 -0.3
728,029 + AO353_03415 0.18 +0.3
728,029 + AO353_03415 0.18 +0.4
728,030 - AO353_03415 0.19 +0.3
728,030 - AO353_03415 0.19 +1.8
728,030 - AO353_03415 0.19 -2.0
728,030 - AO353_03415 0.19 +1.2
728,030 - AO353_03415 0.19 -0.1
728,030 - AO353_03415 0.19 -1.0
728,030 - AO353_03415 0.19 -0.1
728,207 - AO353_03415 0.37 +1.2
728,269 + AO353_03415 0.44 +1.6
728,269 + AO353_03415 0.44 -0.2
728,270 - AO353_03415 0.44 +0.0
728,270 - AO353_03415 0.44 +0.7
728,270 - AO353_03415 0.44 -0.4
728,270 - AO353_03415 0.44 +1.2
728,582 + AO353_03415 0.77 +0.7
728,582 + AO353_03415 0.77 -1.0

Or see this region's nucleotide sequence