Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03200 and AO353_03205 are separated by 19 nucleotides AO353_03205 and AO353_03210 are separated by 233 nucleotides AO353_03210 and AO353_03215 are separated by 33 nucleotides AO353_03215 and AO353_03220 are separated by 155 nucleotides
AO353_03200: AO353_03200 - RNA polymerase subunit sigma-24, at 682,238 to 683,473
_03200
AO353_03205: AO353_03205 - dehydrogenase, at 683,493 to 683,840
_03205
AO353_03210: AO353_03210 - GNAT family acetyltransferase, at 684,074 to 684,559
_03210
AO353_03215: AO353_03215 - pyridoxamine 5'-phosphate oxidase, at 684,593 to 685,198
_03215
AO353_03220: AO353_03220 - GNAT family acetyltransferase, at 685,354 to 685,851
_03220
Position (kb) 684
685 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 683.490 kb on + strand at 683.491 kb on - strand at 683.499 kb on + strand at 683.499 kb on + strand at 683.499 kb on + strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.556 kb on - strand, within AO353_03205 at 683.556 kb on - strand, within AO353_03205 at 683.556 kb on - strand, within AO353_03205 at 683.605 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.676 kb on - strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.756 kb on - strand, within AO353_03205 at 683.761 kb on - strand, within AO353_03205 at 683.819 kb on - strand at 683.819 kb on - strand at 683.819 kb on - strand at 683.819 kb on - strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.841 kb on - strand at 683.841 kb on - strand at 683.841 kb on - strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.968 kb on - strand at 684.003 kb on + strand at 684.003 kb on + strand at 684.004 kb on - strand at 684.008 kb on + strand at 684.008 kb on + strand at 684.008 kb on + strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.334 kb on - strand, within AO353_03210 at 684.365 kb on + strand, within AO353_03210 at 684.365 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.477 kb on - strand, within AO353_03210 at 684.477 kb on - strand, within AO353_03210 at 684.512 kb on + strand at 684.513 kb on - strand at 684.513 kb on - strand at 684.626 kb on + strand at 684.767 kb on - strand, within AO353_03215 at 684.826 kb on + strand, within AO353_03215 at 684.830 kb on - strand, within AO353_03215 at 684.830 kb on - strand, within AO353_03215 at 685.022 kb on + strand, within AO353_03215 at 685.022 kb on + strand, within AO353_03215 at 685.022 kb on + strand, within AO353_03215 at 685.023 kb on - strand, within AO353_03215 at 685.023 kb on - strand at 685.042 kb on + strand, within AO353_03215 at 685.043 kb on - strand, within AO353_03215 at 685.076 kb on + strand, within AO353_03215 at 685.077 kb on - strand, within AO353_03215 at 685.154 kb on + strand at 685.154 kb on + strand at 685.154 kb on + strand at 685.154 kb on + strand at 685.155 kb on - strand at 685.155 kb on - strand at 685.155 kb on - strand at 685.194 kb on - strand at 685.194 kb on - strand at 685.194 kb on - strand at 685.196 kb on + strand at 685.196 kb on + strand at 685.196 kb on + strand at 685.197 kb on - strand at 685.235 kb on - strand at 685.296 kb on + strand at 685.296 kb on + strand at 685.297 kb on - strand at 685.297 kb on - strand at 685.305 kb on + strand at 685.305 kb on + strand at 685.306 kb on - strand at 685.408 kb on + strand, within AO353_03220 at 685.408 kb on + strand, within AO353_03220 at 685.418 kb on + strand, within AO353_03220 at 685.419 kb on - strand, within AO353_03220 at 685.419 kb on - strand, within AO353_03220 at 685.439 kb on + strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.474 kb on - strand, within AO353_03220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 683,490 + +0.8 683,491 - +0.6 683,499 + +0.4 683,499 + +0.8 683,499 + +0.4 683,500 - +0.3 683,500 - -0.2 683,500 - +0.0 683,500 - -1.0 683,556 - AO353_03205 0.18 +1.0 683,556 - AO353_03205 0.18 -1.4 683,556 - AO353_03205 0.18 -0.0 683,605 + AO353_03205 0.32 -0.1 683,675 + AO353_03205 0.52 -0.6 683,675 + AO353_03205 0.52 -0.6 683,675 + AO353_03205 0.52 -1.4 683,676 - AO353_03205 0.53 +0.5 683,755 + AO353_03205 0.75 -0.4 683,755 + AO353_03205 0.75 +0.2 683,755 + AO353_03205 0.75 +0.6 683,756 - AO353_03205 0.76 +0.4 683,761 - AO353_03205 0.77 -0.8 683,819 - -0.5 683,819 - -2.6 683,819 - +0.8 683,819 - -1.8 683,829 + +2.2 683,829 + -0.5 683,829 + +0.6 683,829 + +0.9 683,829 + -0.0 683,829 + -0.0 683,829 + -1.4 683,829 + -0.7 683,829 + +0.3 683,829 + +0.7 683,829 + +0.8 683,829 + +1.0 683,829 + -0.8 683,829 + +0.6 683,829 + +0.4 683,829 + -0.3 683,830 - -0.0 683,830 - -0.5 683,830 - -0.5 683,830 - -0.9 683,830 - +0.6 683,830 - +0.2 683,830 - -0.2 683,830 - +0.4 683,830 - -0.8 683,830 - -0.8 683,830 - +0.4 683,830 - -0.1 683,830 - -1.4 683,830 - -0.9 683,830 - +0.3 683,833 + +0.3 683,833 + -0.4 683,833 + -1.1 683,833 + +0.1 683,833 + +0.2 683,833 + -1.1 683,833 + -0.4 683,833 + +0.1 683,833 + +0.2 683,833 + -1.6 683,833 + +0.2 683,834 - +1.2 683,834 - +1.6 683,834 - -1.6 683,834 - -0.1 683,834 - -0.8 683,834 - +2.0 683,834 - -1.2 683,834 - -0.6 683,834 - +0.7 683,840 + -1.4 683,840 + +0.1 683,840 + +0.3 683,840 + +0.3 683,841 - +0.2 683,841 - -0.2 683,841 - -0.4 683,869 + +0.2 683,869 + +2.3 683,869 + +0.2 683,869 + +0.6 683,869 + -0.1 683,869 + -0.4 683,870 - +0.6 683,870 - +0.2 683,870 - +0.8 683,870 - -0.2 683,870 - -0.6 683,870 - -0.8 683,870 - -0.3 683,870 - +0.7 683,870 - -0.0 683,870 - -0.5 683,870 - +0.2 683,870 - +1.2 683,870 - +0.2 683,870 - -1.4 683,870 - +0.2 683,968 - -1.1 684,003 + +0.3 684,003 + +0.6 684,004 - -1.7 684,008 + +1.3 684,008 + -0.0 684,008 + +0.9 684,009 - -0.0 684,009 - -0.3 684,009 - +0.8 684,009 - +0.2 684,009 - -1.5 684,334 - AO353_03210 0.53 +0.8 684,365 + AO353_03210 0.60 -1.7 684,365 + AO353_03210 0.60 -1.7 684,476 + AO353_03210 0.83 -0.5 684,476 + AO353_03210 0.83 -1.2 684,476 + AO353_03210 0.83 -0.9 684,477 - AO353_03210 0.83 -1.2 684,477 - AO353_03210 0.83 -0.0 684,512 + -2.4 684,513 - -1.6 684,513 - -1.5 684,626 + +0.1 684,767 - AO353_03215 0.29 +0.6 684,826 + AO353_03215 0.38 +0.6 684,830 - AO353_03215 0.39 -1.9 684,830 - AO353_03215 0.39 -0.3 685,022 + AO353_03215 0.71 -1.0 685,022 + AO353_03215 0.71 -1.2 685,022 + AO353_03215 0.71 +1.8 685,023 - AO353_03215 0.71 -0.2 685,023 - -0.0 685,042 + AO353_03215 0.74 -0.1 685,043 - AO353_03215 0.74 +0.1 685,076 + AO353_03215 0.80 +0.1 685,077 - AO353_03215 0.80 +1.3 685,154 + -0.7 685,154 + +0.2 685,154 + -2.2 685,154 + -0.7 685,155 - -0.0 685,155 - +0.8 685,155 - -2.3 685,194 - +0.4 685,194 - -1.8 685,194 - -0.7 685,196 + +1.6 685,196 + +0.0 685,196 + -0.4 685,197 - -0.4 685,235 - +1.2 685,296 + -0.6 685,296 + +2.8 685,297 - +1.3 685,297 - +0.2 685,305 + +0.5 685,305 + +1.3 685,306 - -0.3 685,408 + AO353_03220 0.11 -0.5 685,408 + AO353_03220 0.11 -2.0 685,418 + AO353_03220 0.13 +2.2 685,419 - AO353_03220 0.13 -0.0 685,419 - AO353_03220 0.13 -0.9 685,439 + AO353_03220 0.17 -0.2 685,440 - AO353_03220 0.17 -0.0 685,440 - AO353_03220 0.17 +0.3 685,440 - AO353_03220 0.17 -0.1 685,447 + AO353_03220 0.19 +1.0 685,447 + AO353_03220 0.19 +2.3 685,447 + AO353_03220 0.19 +2.2 685,447 + AO353_03220 0.19 +1.6 685,447 + AO353_03220 0.19 -0.7 685,447 + AO353_03220 0.19 +0.8 685,447 + AO353_03220 0.19 +0.8 685,447 + AO353_03220 0.19 -0.6 685,447 + AO353_03220 0.19 -0.6 685,447 + AO353_03220 0.19 -0.2 685,448 - AO353_03220 0.19 -1.1 685,448 - AO353_03220 0.19 +0.4 685,448 - AO353_03220 0.19 +1.3 685,448 - AO353_03220 0.19 -0.4 685,448 - AO353_03220 0.19 -1.1 685,448 - AO353_03220 0.19 +0.9 685,474 - AO353_03220 0.24 -0.0
Or see this region's nucleotide sequence