Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02875 and AO353_02880 are separated by 151 nucleotides AO353_02880 and AO353_02885 are separated by 48 nucleotides AO353_02885 and AO353_02890 are separated by 95 nucleotides AO353_02890 and AO353_02895 are separated by 56 nucleotides
AO353_02875: AO353_02875 - flagellar biosynthesis protein FlgA, at 611,058 to 611,819
_02875
AO353_02880: AO353_02880 - flagellar biosynthesis anti-sigma factor FlgM, at 611,971 to 612,297
_02880
AO353_02885: AO353_02885 - flagellar biosynthesis protein FlgN, at 612,346 to 612,813
_02885
AO353_02890: AO353_02890 - pilus assembly protein PilZ, at 612,909 to 613,655
_02890
AO353_02895: AO353_02895 - MFS transporter, at 613,712 to 615,100
_02895
Position (kb) 612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 611.351 kb on + strand, within AO353_02875 at 611.352 kb on - strand, within AO353_02875 at 611.353 kb on + strand, within AO353_02875 at 611.353 kb on + strand, within AO353_02875 at 611.353 kb on + strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.354 kb on - strand, within AO353_02875 at 611.541 kb on + strand, within AO353_02875 at 611.609 kb on + strand, within AO353_02875 at 611.610 kb on - strand, within AO353_02875 at 611.610 kb on - strand, within AO353_02875 at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.817 kb on + strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.818 kb on - strand at 611.821 kb on + strand at 611.821 kb on + strand at 611.821 kb on + strand at 611.821 kb on + strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.822 kb on - strand at 611.848 kb on + strand at 611.873 kb on + strand at 611.873 kb on + strand at 611.873 kb on + strand at 611.899 kb on - strand at 611.899 kb on - strand at 611.907 kb on + strand at 611.907 kb on + strand at 611.907 kb on + strand at 611.908 kb on - strand at 611.908 kb on - strand at 611.993 kb on + strand at 612.238 kb on + strand, within AO353_02880 at 612.276 kb on + strand at 612.277 kb on - strand at 612.277 kb on - strand at 612.277 kb on - strand at 612.328 kb on + strand at 612.328 kb on + strand at 612.329 kb on - strand at 612.329 kb on - strand at 612.362 kb on + strand at 612.362 kb on + strand at 612.363 kb on - strand at 612.363 kb on - strand at 612.363 kb on - strand at 612.363 kb on - strand at 612.597 kb on + strand, within AO353_02885 at 612.754 kb on + strand, within AO353_02885 at 612.755 kb on - strand, within AO353_02885 at 612.755 kb on - strand, within AO353_02885 at 612.819 kb on + strand at 612.820 kb on - strand at 612.820 kb on - strand at 612.820 kb on - strand at 612.820 kb on - strand at 612.820 kb on - strand at 612.823 kb on + strand at 612.823 kb on + strand at 612.823 kb on + strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.834 kb on + strand at 612.834 kb on + strand at 612.884 kb on + strand at 612.884 kb on + strand at 612.884 kb on + strand at 612.884 kb on + strand at 612.885 kb on - strand at 612.885 kb on - strand at 612.903 kb on + strand at 612.903 kb on + strand at 612.904 kb on - strand at 613.059 kb on + strand, within AO353_02890 at 613.059 kb on + strand, within AO353_02890 at 613.059 kb on + strand, within AO353_02890 at 613.059 kb on + strand, within AO353_02890 at 613.060 kb on - strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.181 kb on - strand, within AO353_02890 at 613.181 kb on - strand, within AO353_02890 at 613.181 kb on - strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.243 kb on - strand, within AO353_02890 at 613.273 kb on - strand, within AO353_02890 at 613.273 kb on - strand, within AO353_02890 at 613.324 kb on + strand, within AO353_02890 at 613.382 kb on + strand, within AO353_02890 at 613.383 kb on - strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.453 kb on - strand, within AO353_02890 at 613.453 kb on - strand, within AO353_02890 at 613.512 kb on + strand, within AO353_02890 at 613.513 kb on - strand, within AO353_02890 at 613.513 kb on - strand, within AO353_02890 at 613.555 kb on + strand, within AO353_02890 at 613.609 kb on - strand at 613.609 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 611,351 + AO353_02875 0.38 +1.3 611,352 - AO353_02875 0.39 -0.1 611,353 + AO353_02875 0.39 +0.2 611,353 + AO353_02875 0.39 +0.8 611,353 + AO353_02875 0.39 +1.2 611,354 - AO353_02875 0.39 +0.1 611,354 - AO353_02875 0.39 -1.0 611,354 - AO353_02875 0.39 -0.0 611,354 - AO353_02875 0.39 -1.7 611,354 - AO353_02875 0.39 -1.4 611,354 - AO353_02875 0.39 -0.7 611,354 - AO353_02875 0.39 +0.7 611,354 - AO353_02875 0.39 -0.2 611,354 - AO353_02875 0.39 -0.8 611,541 + AO353_02875 0.63 +2.0 611,609 + AO353_02875 0.72 -1.0 611,610 - AO353_02875 0.72 -1.3 611,610 - AO353_02875 0.72 -0.2 611,817 + +0.6 611,817 + +0.4 611,817 + -0.3 611,817 + +0.5 611,817 + -1.9 611,817 + -1.9 611,817 + -0.0 611,817 + -1.5 611,817 + -0.1 611,817 + -0.6 611,817 + +0.4 611,817 + +0.5 611,817 + +0.1 611,817 + -0.0 611,818 - -1.6 611,818 - +1.4 611,818 - -0.8 611,818 - -1.4 611,818 - -1.5 611,818 - -1.2 611,818 - +1.3 611,818 - +0.1 611,818 - -1.5 611,818 - +0.4 611,818 - +0.1 611,818 - +0.1 611,821 + +0.3 611,821 + -2.2 611,821 + -2.8 611,821 + +0.2 611,822 - +1.0 611,822 - -1.1 611,822 - -0.5 611,822 - -1.5 611,822 - -0.3 611,822 - +0.2 611,848 + +0.3 611,873 + +0.1 611,873 + -0.2 611,873 + -1.5 611,899 - -0.4 611,899 - -0.8 611,907 + -1.0 611,907 + -0.2 611,907 + -1.8 611,908 - -0.3 611,908 - +0.2 611,993 + -2.2 612,238 + AO353_02880 0.82 -1.6 612,276 + +0.6 612,277 - +0.1 612,277 - -0.8 612,277 - -1.5 612,328 + +0.5 612,328 + -0.4 612,329 - -0.6 612,329 - -2.7 612,362 + -0.1 612,362 + -0.7 612,363 - +1.1 612,363 - -0.6 612,363 - -0.1 612,363 - -0.8 612,597 + AO353_02885 0.54 +0.0 612,754 + AO353_02885 0.87 -1.2 612,755 - AO353_02885 0.87 -1.5 612,755 - AO353_02885 0.87 -0.8 612,819 + -0.3 612,820 - -0.0 612,820 - +1.8 612,820 - -0.1 612,820 - +1.3 612,820 - +0.1 612,823 + -0.8 612,823 + -0.0 612,823 + +2.0 612,824 - +0.8 612,824 - +1.1 612,824 - -0.3 612,824 - +0.4 612,824 - +0.1 612,824 - -1.3 612,824 - +0.6 612,824 - +0.5 612,834 + +0.8 612,834 + -1.0 612,884 + -1.5 612,884 + +0.2 612,884 + +1.0 612,884 + +0.2 612,885 - +0.5 612,885 - +0.1 612,903 + +1.1 612,903 + +0.4 612,904 - -0.9 613,059 + AO353_02890 0.20 -0.1 613,059 + AO353_02890 0.20 +0.4 613,059 + AO353_02890 0.20 -0.0 613,059 + AO353_02890 0.20 -0.9 613,060 - AO353_02890 0.20 +0.2 613,180 + AO353_02890 0.36 -0.1 613,180 + AO353_02890 0.36 +1.7 613,180 + AO353_02890 0.36 -0.1 613,180 + AO353_02890 0.36 -1.9 613,180 + AO353_02890 0.36 +0.2 613,181 - AO353_02890 0.36 -2.7 613,181 - AO353_02890 0.36 -0.3 613,181 - AO353_02890 0.36 -0.5 613,184 + AO353_02890 0.37 +0.1 613,184 + AO353_02890 0.37 -0.9 613,184 + AO353_02890 0.37 +0.7 613,184 + AO353_02890 0.37 +1.3 613,184 + AO353_02890 0.37 -1.0 613,184 + AO353_02890 0.37 +0.3 613,184 + AO353_02890 0.37 -1.2 613,184 + AO353_02890 0.37 -0.9 613,184 + AO353_02890 0.37 -0.3 613,184 + AO353_02890 0.37 +0.1 613,184 + AO353_02890 0.37 -0.5 613,185 - AO353_02890 0.37 -0.3 613,185 - AO353_02890 0.37 -1.3 613,185 - AO353_02890 0.37 +1.0 613,185 - AO353_02890 0.37 -0.0 613,185 - AO353_02890 0.37 -1.0 613,185 - AO353_02890 0.37 +0.8 613,243 - AO353_02890 0.45 -0.5 613,273 - AO353_02890 0.49 -1.2 613,273 - AO353_02890 0.49 +0.5 613,324 + AO353_02890 0.56 -0.2 613,382 + AO353_02890 0.63 -0.1 613,383 - AO353_02890 0.63 -1.2 613,452 + AO353_02890 0.73 -1.0 613,452 + AO353_02890 0.73 -0.6 613,452 + AO353_02890 0.73 -1.1 613,452 + AO353_02890 0.73 +0.3 613,452 + AO353_02890 0.73 +0.4 613,452 + AO353_02890 0.73 +0.9 613,453 - AO353_02890 0.73 +0.5 613,453 - AO353_02890 0.73 +0.7 613,512 + AO353_02890 0.81 -0.3 613,513 - AO353_02890 0.81 -1.4 613,513 - AO353_02890 0.81 -1.0 613,555 + AO353_02890 0.86 +0.2 613,609 - +1.0 613,609 - -0.3
Or see this region's nucleotide sequence