Experiment: D-Cycloserine 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02640 and AO353_02645 are separated by 473 nucleotides AO353_02645 and AO353_02650 are separated by 27 nucleotides AO353_02650 and AO353_02655 are separated by 15 nucleotides
AO353_02640: AO353_02640 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 562,683 to 563,294
_02640
AO353_02645: AO353_02645 - hypothetical protein, at 563,768 to 564,352
_02645
AO353_02650: AO353_02650 - SAM-dependent methyltransferase, at 564,380 to 565,042
_02650
AO353_02655: AO353_02655 - peptidase P60, at 565,058 to 565,591
_02655
Position (kb) 563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2 at 562.804 kb on - strand, within AO353_02640 at 562.864 kb on + strand, within AO353_02640 at 563.336 kb on + strand at 563.336 kb on + strand at 563.337 kb on - strand at 563.337 kb on - strand at 563.342 kb on + strand at 563.342 kb on + strand at 563.481 kb on + strand at 563.489 kb on + strand at 563.489 kb on + strand at 563.489 kb on + strand at 563.489 kb on + strand at 563.489 kb on + strand at 563.490 kb on - strand at 563.490 kb on - strand at 563.612 kb on + strand at 563.612 kb on + strand at 563.613 kb on - strand at 563.638 kb on + strand at 563.638 kb on + strand at 563.638 kb on + strand at 563.638 kb on + strand at 563.639 kb on - strand at 563.639 kb on - strand at 563.740 kb on + strand at 563.740 kb on + strand at 563.741 kb on - strand at 563.741 kb on - strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.850 kb on - strand, within AO353_02645 at 563.882 kb on + strand, within AO353_02645 at 563.995 kb on + strand, within AO353_02645 at 563.995 kb on + strand, within AO353_02645 at 563.995 kb on + strand, within AO353_02645 at 563.996 kb on - strand, within AO353_02645 at 563.996 kb on - strand, within AO353_02645 at 564.041 kb on + strand, within AO353_02645 at 564.041 kb on + strand, within AO353_02645 at 564.134 kb on + strand, within AO353_02645 at 564.134 kb on + strand, within AO353_02645 at 564.197 kb on - strand, within AO353_02645 at 564.264 kb on - strand, within AO353_02645 at 564.278 kb on + strand, within AO353_02645 at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.365 kb on + strand at 564.365 kb on + strand at 564.366 kb on - strand at 564.382 kb on - strand at 564.464 kb on - strand, within AO353_02650 at 564.512 kb on + strand, within AO353_02650 at 564.513 kb on - strand, within AO353_02650 at 564.543 kb on - strand, within AO353_02650 at 564.588 kb on + strand, within AO353_02650 at 564.589 kb on - strand, within AO353_02650 at 564.589 kb on - strand, within AO353_02650 at 564.589 kb on - strand, within AO353_02650 at 564.753 kb on + strand, within AO353_02650 at 564.753 kb on + strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.005 kb on + strand at 565.006 kb on - strand at 565.006 kb on - strand at 565.059 kb on + strand at 565.059 kb on + strand at 565.110 kb on + strand at 565.110 kb on + strand at 565.110 kb on + strand at 565.110 kb on + strand at 565.111 kb on - strand at 565.111 kb on - strand at 565.125 kb on + strand, within AO353_02655 at 565.126 kb on - strand, within AO353_02655 at 565.126 kb on - strand, within AO353_02655 at 565.157 kb on - strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.265 kb on + strand, within AO353_02655 at 565.266 kb on - strand, within AO353_02655 at 565.266 kb on - strand, within AO353_02655 at 565.266 kb on - strand, within AO353_02655 at 565.333 kb on + strand, within AO353_02655 at 565.333 kb on + strand, within AO353_02655
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.1 mg/ml remove 562,804 - AO353_02640 0.20 -0.3 562,864 + AO353_02640 0.30 +0.1 563,336 + -1.0 563,336 + +0.2 563,337 - +1.3 563,337 - -0.7 563,342 + +0.3 563,342 + +0.7 563,481 + +1.0 563,489 + -0.3 563,489 + +0.1 563,489 + -0.7 563,489 + -0.1 563,489 + -0.4 563,490 - +1.5 563,490 - -0.4 563,612 + -0.3 563,612 + -2.1 563,613 - -0.1 563,638 + -0.1 563,638 + -0.1 563,638 + +1.1 563,638 + -0.8 563,639 - +1.5 563,639 - -0.9 563,740 + +0.9 563,740 + +1.3 563,741 - +0.1 563,741 - -0.8 563,745 + +0.3 563,745 + -1.0 563,745 + -0.1 563,745 + -0.5 563,745 + -0.1 563,745 + +0.4 563,746 - -0.5 563,746 - +0.2 563,746 - -0.9 563,746 - -0.1 563,746 - +2.1 563,746 - -1.9 563,850 - AO353_02645 0.14 -0.4 563,882 + AO353_02645 0.19 -0.6 563,995 + AO353_02645 0.39 +0.2 563,995 + AO353_02645 0.39 +0.4 563,995 + AO353_02645 0.39 -0.9 563,996 - AO353_02645 0.39 +1.1 563,996 - AO353_02645 0.39 -1.1 564,041 + AO353_02645 0.47 -1.7 564,041 + AO353_02645 0.47 -0.2 564,134 + AO353_02645 0.63 +0.3 564,134 + AO353_02645 0.63 -1.3 564,197 - AO353_02645 0.73 -0.2 564,264 - AO353_02645 0.85 -0.7 564,278 + AO353_02645 0.87 -1.1 564,308 + -0.5 564,308 + +0.9 564,308 + -0.7 564,308 + -1.9 564,308 + +1.3 564,308 + +1.1 564,308 + +0.3 564,308 + -0.6 564,309 - -1.1 564,309 - +0.5 564,309 - +0.7 564,309 - +0.3 564,309 - +1.2 564,309 - +0.3 564,309 - -0.3 564,365 + +0.7 564,365 + -1.9 564,366 - -0.5 564,382 - +0.7 564,464 - AO353_02650 0.13 -0.4 564,512 + AO353_02650 0.20 +1.2 564,513 - AO353_02650 0.20 +0.5 564,543 - AO353_02650 0.25 +0.9 564,588 + AO353_02650 0.31 +0.3 564,589 - AO353_02650 0.32 -0.8 564,589 - AO353_02650 0.32 -0.8 564,589 - AO353_02650 0.32 +0.5 564,753 + AO353_02650 0.56 +0.0 564,753 + AO353_02650 0.56 +1.5 564,754 - AO353_02650 0.56 -0.0 564,754 - AO353_02650 0.56 +0.8 564,754 - -0.5 564,754 - AO353_02650 0.56 -0.4 564,754 - AO353_02650 0.56 -0.2 564,754 - AO353_02650 0.56 +0.1 564,754 - AO353_02650 0.56 +0.1 564,999 + +0.7 564,999 + +0.3 564,999 + -0.2 564,999 + -0.1 564,999 + -2.1 565,000 - -1.2 565,000 - +1.0 565,000 - -0.3 565,000 - -1.7 565,000 - +1.0 565,000 - -0.5 565,003 + -0.5 565,003 + -0.4 565,003 + -0.7 565,003 + +0.1 565,003 + -0.8 565,003 + +0.9 565,003 + +0.1 565,003 + +0.7 565,003 + +0.3 565,003 + +0.3 565,003 + -1.3 565,003 + -0.6 565,004 - +0.8 565,004 - -1.3 565,004 - -1.5 565,004 - -0.1 565,004 - -0.1 565,004 - -1.7 565,005 + +0.8 565,006 - +0.7 565,006 - -1.3 565,059 + +1.1 565,059 + -0.2 565,110 + -1.3 565,110 + +0.1 565,110 + -0.1 565,110 + -0.3 565,111 - -1.7 565,111 - +0.6 565,125 + AO353_02655 0.13 +1.2 565,126 - AO353_02655 0.13 -0.3 565,126 - AO353_02655 0.13 +0.9 565,157 - AO353_02655 0.19 +0.1 565,200 + AO353_02655 0.27 +1.2 565,200 + AO353_02655 0.27 +0.5 565,200 + AO353_02655 0.27 +0.8 565,200 + AO353_02655 0.27 +2.3 565,200 + AO353_02655 0.27 -1.6 565,200 + AO353_02655 0.27 -0.3 565,201 - AO353_02655 0.27 +0.3 565,201 - AO353_02655 0.27 -0.2 565,201 - AO353_02655 0.27 +1.8 565,201 - AO353_02655 0.27 +0.9 565,201 - AO353_02655 0.27 +0.2 565,265 + AO353_02655 0.39 -0.3 565,266 - AO353_02655 0.39 -0.5 565,266 - AO353_02655 0.39 -0.6 565,266 - AO353_02655 0.39 -0.1 565,333 + AO353_02655 0.51 +0.1 565,333 + AO353_02655 0.51 -1.1
Or see this region's nucleotide sequence