Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19210

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19205 and ABZR86_RS19210 are separated by 99 nucleotidesABZR86_RS19210 and ABZR86_RS19215 are separated by 190 nucleotidesABZR86_RS19215 and ABZR86_RS19220 are separated by 60 nucleotides ABZR86_RS19205: ABZR86_RS19205 - low-specificity L-threonine aldolase, at 295,590 to 296,612 _RS19205 ABZR86_RS19210: ABZR86_RS19210 - polyhydroxyalkanoate depolymerase, at 296,712 to 297,965 _RS19210 ABZR86_RS19215: ABZR86_RS19215 - class I SAM-dependent methyltransferase, at 298,156 to 298,902 _RS19215 ABZR86_RS19220: ABZR86_RS19220 - RDD family protein, at 298,963 to 299,469 _RS19220 Position (kb) 296 297 298Strain fitness (log2 ratio) -1 0 1at 295.821 kb on + strand, within ABZR86_RS19205at 295.821 kb on + strand, within ABZR86_RS19205at 295.821 kb on + strand, within ABZR86_RS19205at 295.844 kb on + strand, within ABZR86_RS19205at 295.844 kb on + strand, within ABZR86_RS19205at 295.844 kb on + strand, within ABZR86_RS19205at 295.844 kb on + strand, within ABZR86_RS19205at 295.845 kb on - strand, within ABZR86_RS19205at 295.845 kb on - strand, within ABZR86_RS19205at 295.848 kb on + strand, within ABZR86_RS19205at 295.849 kb on - strand, within ABZR86_RS19205at 295.849 kb on - strand, within ABZR86_RS19205at 295.849 kb on - strand, within ABZR86_RS19205at 296.037 kb on + strand, within ABZR86_RS19205at 296.512 kb on - strandat 296.619 kb on + strandat 296.620 kb on - strandat 296.620 kb on - strandat 296.701 kb on + strandat 296.701 kb on + strandat 296.701 kb on + strandat 296.701 kb on + strandat 296.701 kb on + strandat 296.701 kb on + strandat 296.702 kb on - strandat 296.702 kb on - strandat 296.702 kb on - strandat 296.702 kb on - strandat 296.761 kb on + strandat 296.762 kb on - strandat 297.031 kb on + strand, within ABZR86_RS19210at 297.034 kb on + strand, within ABZR86_RS19210at 297.034 kb on + strand, within ABZR86_RS19210at 297.035 kb on - strand, within ABZR86_RS19210at 297.064 kb on + strand, within ABZR86_RS19210at 297.064 kb on + strand, within ABZR86_RS19210at 297.064 kb on + strand, within ABZR86_RS19210at 297.064 kb on + strand, within ABZR86_RS19210at 297.065 kb on - strand, within ABZR86_RS19210at 297.065 kb on - strand, within ABZR86_RS19210at 297.065 kb on - strand, within ABZR86_RS19210at 297.065 kb on - strand, within ABZR86_RS19210at 297.073 kb on + strand, within ABZR86_RS19210at 297.074 kb on - strand, within ABZR86_RS19210at 297.128 kb on - strand, within ABZR86_RS19210at 297.476 kb on - strand, within ABZR86_RS19210at 297.476 kb on - strand, within ABZR86_RS19210at 297.484 kb on + strand, within ABZR86_RS19210at 297.484 kb on + strand, within ABZR86_RS19210at 297.484 kb on + strand, within ABZR86_RS19210at 297.485 kb on - strand, within ABZR86_RS19210at 297.550 kb on + strand, within ABZR86_RS19210at 297.550 kb on + strand, within ABZR86_RS19210at 297.550 kb on + strand, within ABZR86_RS19210at 297.551 kb on - strand, within ABZR86_RS19210at 297.551 kb on - strand, within ABZR86_RS19210at 297.551 kb on - strand, within ABZR86_RS19210at 297.551 kb on - strand, within ABZR86_RS19210at 297.551 kb on - strand, within ABZR86_RS19210at 297.551 kb on - strand, within ABZR86_RS19210at 297.551 kb on - strand, within ABZR86_RS19210at 297.682 kb on + strand, within ABZR86_RS19210at 297.682 kb on + strand, within ABZR86_RS19210at 297.683 kb on - strand, within ABZR86_RS19210at 297.796 kb on + strand, within ABZR86_RS19210at 297.958 kb on + strandat 297.958 kb on + strandat 297.959 kb on - strandat 298.001 kb on + strandat 298.001 kb on + strandat 298.053 kb on + strandat 298.054 kb on - strandat 298.070 kb on + strandat 298.116 kb on + strandat 298.116 kb on + strandat 298.157 kb on + strandat 298.158 kb on - strandat 298.158 kb on - strandat 298.271 kb on + strand, within ABZR86_RS19215at 298.271 kb on + strand, within ABZR86_RS19215at 298.271 kb on + strand, within ABZR86_RS19215at 298.272 kb on - strand, within ABZR86_RS19215at 298.272 kb on - strand, within ABZR86_RS19215at 298.272 kb on - strand, within ABZR86_RS19215at 298.307 kb on + strand, within ABZR86_RS19215at 298.308 kb on - strand, within ABZR86_RS19215at 298.308 kb on - strand, within ABZR86_RS19215at 298.308 kb on - strand, within ABZR86_RS19215at 298.355 kb on + strand, within ABZR86_RS19215at 298.356 kb on - strand, within ABZR86_RS19215at 298.356 kb on - strand, within ABZR86_RS19215at 298.604 kb on + strand, within ABZR86_RS19215at 298.604 kb on + strand, within ABZR86_RS19215at 298.605 kb on - strand, within ABZR86_RS19215at 298.785 kb on + strand, within ABZR86_RS19215at 298.785 kb on + strand, within ABZR86_RS19215at 298.836 kb on - strandat 298.836 kb on - strandat 298.836 kb on - strandat 298.908 kb on + strandat 298.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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295,821 + ABZR86_RS19205 0.23 +0.1
295,821 + ABZR86_RS19205 0.23 +0.1
295,821 + ABZR86_RS19205 0.23 -0.2
295,844 + ABZR86_RS19205 0.25 +0.3
295,844 + ABZR86_RS19205 0.25 +0.2
295,844 + ABZR86_RS19205 0.25 +0.4
295,844 + ABZR86_RS19205 0.25 +0.1
295,845 - ABZR86_RS19205 0.25 +0.9
295,845 - ABZR86_RS19205 0.25 +0.6
295,848 + ABZR86_RS19205 0.25 -0.1
295,849 - ABZR86_RS19205 0.25 -0.0
295,849 - ABZR86_RS19205 0.25 -0.4
295,849 - ABZR86_RS19205 0.25 +0.3
296,037 + ABZR86_RS19205 0.44 +0.1
296,512 - +0.5
296,619 + +0.6
296,620 - -1.4
296,620 - +0.0
296,701 + +0.1
296,701 + +0.3
296,701 + +1.2
296,701 + +0.3
296,701 + +0.6
296,701 + +0.2
296,702 - +0.1
296,702 - -0.2
296,702 - -0.5
296,702 - +0.7
296,761 + +0.3
296,762 - +0.6
297,031 + ABZR86_RS19210 0.25 -0.5
297,034 + ABZR86_RS19210 0.26 -0.1
297,034 + ABZR86_RS19210 0.26 -0.1
297,035 - ABZR86_RS19210 0.26 -0.9
297,064 + ABZR86_RS19210 0.28 +0.0
297,064 + ABZR86_RS19210 0.28 +1.1
297,064 + ABZR86_RS19210 0.28 +0.2
297,064 + ABZR86_RS19210 0.28 -0.0
297,065 - ABZR86_RS19210 0.28 +0.9
297,065 - ABZR86_RS19210 0.28 +0.9
297,065 - ABZR86_RS19210 0.28 +0.4
297,065 - ABZR86_RS19210 0.28 +0.5
297,073 + ABZR86_RS19210 0.29 -0.1
297,074 - ABZR86_RS19210 0.29 +0.1
297,128 - ABZR86_RS19210 0.33 -0.0
297,476 - ABZR86_RS19210 0.61 -0.5
297,476 - ABZR86_RS19210 0.61 +0.6
297,484 + ABZR86_RS19210 0.62 +0.3
297,484 + ABZR86_RS19210 0.62 +0.7
297,484 + ABZR86_RS19210 0.62 +0.2
297,485 - ABZR86_RS19210 0.62 -0.1
297,550 + ABZR86_RS19210 0.67 +0.3
297,550 + ABZR86_RS19210 0.67 -0.6
297,550 + ABZR86_RS19210 0.67 +0.4
297,551 - ABZR86_RS19210 0.67 +0.9
297,551 - ABZR86_RS19210 0.67 +1.4
297,551 - ABZR86_RS19210 0.67 +0.8
297,551 - ABZR86_RS19210 0.67 +0.7
297,551 - ABZR86_RS19210 0.67 +0.3
297,551 - ABZR86_RS19210 0.67 +0.3
297,551 - ABZR86_RS19210 0.67 -0.6
297,682 + ABZR86_RS19210 0.77 +0.0
297,682 + ABZR86_RS19210 0.77 -0.0
297,683 - ABZR86_RS19210 0.77 +1.5
297,796 + ABZR86_RS19210 0.86 -0.6
297,958 + +0.5
297,958 + +0.8
297,959 - -0.4
298,001 + -1.3
298,001 + -0.3
298,053 + -0.2
298,054 - -0.3
298,070 + -0.4
298,116 + +0.4
298,116 + +0.1
298,157 + +0.1
298,158 - +1.0
298,158 - -1.7
298,271 + ABZR86_RS19215 0.15 +1.0
298,271 + ABZR86_RS19215 0.15 +0.1
298,271 + ABZR86_RS19215 0.15 -0.3
298,272 - ABZR86_RS19215 0.16 -0.0
298,272 - ABZR86_RS19215 0.16 -0.1
298,272 - ABZR86_RS19215 0.16 +0.2
298,307 + ABZR86_RS19215 0.20 +0.2
298,308 - ABZR86_RS19215 0.20 -0.4
298,308 - ABZR86_RS19215 0.20 -0.3
298,308 - ABZR86_RS19215 0.20 +0.4
298,355 + ABZR86_RS19215 0.27 -0.3
298,356 - ABZR86_RS19215 0.27 -0.4
298,356 - ABZR86_RS19215 0.27 +0.4
298,604 + ABZR86_RS19215 0.60 -0.1
298,604 + ABZR86_RS19215 0.60 +0.2
298,605 - ABZR86_RS19215 0.60 -0.7
298,785 + ABZR86_RS19215 0.84 -1.1
298,785 + ABZR86_RS19215 0.84 +0.3
298,836 - -0.1
298,836 - -0.4
298,836 - +0.6
298,908 + -0.1
298,909 - -0.2

Or see this region's nucleotide sequence