Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19130

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS19125 and ABZR86_RS19130 are separated by 183 nucleotidesABZR86_RS19130 and ABZR86_RS19135 are separated by 101 nucleotidesABZR86_RS19135 and ABZR86_RS19140 are separated by 147 nucleotides ABZR86_RS19125: ABZR86_RS19125 - ATP-binding protein, at 269,357 to 270,634 _RS19125 ABZR86_RS19130: ABZR86_RS19130 - outer membrane beta-barrel protein, at 270,818 to 271,510 _RS19130 ABZR86_RS19135: ABZR86_RS19135 - hypothetical protein, at 271,612 to 271,872 _RS19135 ABZR86_RS19140: ABZR86_RS19140 - outer membrane beta-barrel protein, at 272,020 to 272,745 _RS19140 Position (kb) 270 271 272Strain fitness (log2 ratio) -2 -1 0 1at 269.828 kb on + strand, within ABZR86_RS19125at 269.829 kb on - strand, within ABZR86_RS19125at 269.829 kb on - strand, within ABZR86_RS19125at 269.829 kb on - strand, within ABZR86_RS19125at 269.870 kb on + strand, within ABZR86_RS19125at 269.904 kb on + strand, within ABZR86_RS19125at 269.905 kb on - strand, within ABZR86_RS19125at 269.956 kb on + strand, within ABZR86_RS19125at 269.957 kb on - strand, within ABZR86_RS19125at 270.036 kb on + strand, within ABZR86_RS19125at 270.037 kb on - strand, within ABZR86_RS19125at 270.037 kb on - strand, within ABZR86_RS19125at 270.041 kb on - strand, within ABZR86_RS19125at 270.113 kb on + strand, within ABZR86_RS19125at 270.136 kb on + strand, within ABZR86_RS19125at 270.176 kb on + strand, within ABZR86_RS19125at 270.177 kb on - strand, within ABZR86_RS19125at 270.215 kb on + strand, within ABZR86_RS19125at 270.241 kb on + strand, within ABZR86_RS19125at 270.241 kb on + strand, within ABZR86_RS19125at 270.482 kb on + strand, within ABZR86_RS19125at 270.482 kb on + strand, within ABZR86_RS19125at 270.482 kb on + strand, within ABZR86_RS19125at 270.482 kb on + strand, within ABZR86_RS19125at 270.483 kb on - strand, within ABZR86_RS19125at 270.483 kb on - strand, within ABZR86_RS19125at 270.483 kb on - strand, within ABZR86_RS19125at 270.483 kb on - strand, within ABZR86_RS19125at 270.582 kb on + strandat 270.583 kb on - strandat 270.693 kb on + strandat 270.703 kb on + strandat 270.729 kb on + strandat 270.791 kb on - strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.927 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.220 kb on + strand, within ABZR86_RS19130at 271.221 kb on - strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.333 kb on + strand, within ABZR86_RS19130at 271.333 kb on + strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.336 kb on + strand, within ABZR86_RS19130at 271.337 kb on - strand, within ABZR86_RS19130at 271.337 kb on - strand, within ABZR86_RS19130at 271.370 kb on + strand, within ABZR86_RS19130at 271.384 kb on + strand, within ABZR86_RS19130at 271.385 kb on - strand, within ABZR86_RS19130at 271.465 kb on - strandat 271.496 kb on + strandat 271.508 kb on + strandat 271.508 kb on + strandat 271.509 kb on - strandat 271.509 kb on - strandat 271.516 kb on + strandat 271.516 kb on + strandat 271.517 kb on - strandat 271.728 kb on - strand, within ABZR86_RS19135at 271.878 kb on + strandat 271.878 kb on + strandat 271.900 kb on + strandat 271.924 kb on - strandat 272.103 kb on - strand, within ABZR86_RS19140at 272.128 kb on + strand, within ABZR86_RS19140at 272.128 kb on + strand, within ABZR86_RS19140at 272.128 kb on + strand, within ABZR86_RS19140at 272.129 kb on - strand, within ABZR86_RS19140at 272.129 kb on - strand, within ABZR86_RS19140at 272.161 kb on + strand, within ABZR86_RS19140at 272.287 kb on + strand, within ABZR86_RS19140at 272.425 kb on + strand, within ABZR86_RS19140at 272.446 kb on + strand, within ABZR86_RS19140at 272.446 kb on + strand, within ABZR86_RS19140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
269,828 + ABZR86_RS19125 0.37 +1.2
269,829 - ABZR86_RS19125 0.37 -0.6
269,829 - ABZR86_RS19125 0.37 +0.2
269,829 - ABZR86_RS19125 0.37 -0.7
269,870 + ABZR86_RS19125 0.40 +0.5
269,904 + ABZR86_RS19125 0.43 -0.6
269,905 - ABZR86_RS19125 0.43 +0.3
269,956 + ABZR86_RS19125 0.47 -0.4
269,957 - ABZR86_RS19125 0.47 +0.0
270,036 + ABZR86_RS19125 0.53 +0.6
270,037 - ABZR86_RS19125 0.53 -0.3
270,037 - ABZR86_RS19125 0.53 +0.2
270,041 - ABZR86_RS19125 0.54 +0.7
270,113 + ABZR86_RS19125 0.59 +0.6
270,136 + ABZR86_RS19125 0.61 +0.0
270,176 + ABZR86_RS19125 0.64 -0.1
270,177 - ABZR86_RS19125 0.64 +0.3
270,215 + ABZR86_RS19125 0.67 +0.1
270,241 + ABZR86_RS19125 0.69 +0.2
270,241 + ABZR86_RS19125 0.69 +1.0
270,482 + ABZR86_RS19125 0.88 -0.0
270,482 + ABZR86_RS19125 0.88 +0.2
270,482 + ABZR86_RS19125 0.88 +0.0
270,482 + ABZR86_RS19125 0.88 +0.3
270,483 - ABZR86_RS19125 0.88 -0.3
270,483 - ABZR86_RS19125 0.88 +0.1
270,483 - ABZR86_RS19125 0.88 -0.0
270,483 - ABZR86_RS19125 0.88 -0.2
270,582 + -0.9
270,583 - -0.1
270,693 + +0.2
270,703 + +0.2
270,729 + -0.6
270,791 - -2.0
270,832 + -1.0
270,832 + +0.8
270,927 - ABZR86_RS19130 0.16 -0.1
271,177 - ABZR86_RS19130 0.52 +0.1
271,177 - ABZR86_RS19130 0.52 -0.2
271,177 - ABZR86_RS19130 0.52 -0.4
271,220 + ABZR86_RS19130 0.58 +0.6
271,221 - ABZR86_RS19130 0.58 +0.4
271,241 + ABZR86_RS19130 0.61 +0.1
271,241 + ABZR86_RS19130 0.61 +0.1
271,241 + ABZR86_RS19130 0.61 -0.3
271,241 + ABZR86_RS19130 0.61 +0.8
271,241 + ABZR86_RS19130 0.61 +0.6
271,241 + ABZR86_RS19130 0.61 +0.2
271,241 + ABZR86_RS19130 0.61 -0.4
271,241 + ABZR86_RS19130 0.61 -0.0
271,242 - ABZR86_RS19130 0.61 +0.4
271,242 - ABZR86_RS19130 0.61 +0.4
271,242 - ABZR86_RS19130 0.61 -1.3
271,242 - ABZR86_RS19130 0.61 +0.5
271,242 - ABZR86_RS19130 0.61 +1.0
271,242 - ABZR86_RS19130 0.61 -0.4
271,242 - ABZR86_RS19130 0.61 +0.6
271,242 - ABZR86_RS19130 0.61 -0.1
271,242 - ABZR86_RS19130 0.61 +0.2
271,242 - ABZR86_RS19130 0.61 +0.4
271,242 - ABZR86_RS19130 0.61 -1.1
271,242 - ABZR86_RS19130 0.61 +0.9
271,333 + ABZR86_RS19130 0.74 +0.1
271,333 + ABZR86_RS19130 0.74 -2.2
271,334 - ABZR86_RS19130 0.74 +0.4
271,334 - ABZR86_RS19130 0.74 +0.3
271,334 - ABZR86_RS19130 0.74 -0.2
271,336 + ABZR86_RS19130 0.75 +0.3
271,337 - ABZR86_RS19130 0.75 +0.1
271,337 - ABZR86_RS19130 0.75 +0.7
271,370 + ABZR86_RS19130 0.80 -0.0
271,384 + ABZR86_RS19130 0.82 -1.2
271,385 - ABZR86_RS19130 0.82 +0.8
271,465 - +0.1
271,496 + -0.2
271,508 + -0.1
271,508 + +0.0
271,509 - +0.1
271,509 - -0.5
271,516 + +0.1
271,516 + +0.3
271,517 - +0.2
271,728 - ABZR86_RS19135 0.44 -1.4
271,878 + -0.2
271,878 + +1.0
271,900 + +0.4
271,924 - -0.4
272,103 - ABZR86_RS19140 0.11 -0.1
272,128 + ABZR86_RS19140 0.15 -0.3
272,128 + ABZR86_RS19140 0.15 +0.1
272,128 + ABZR86_RS19140 0.15 -0.4
272,129 - ABZR86_RS19140 0.15 -0.2
272,129 - ABZR86_RS19140 0.15 +1.0
272,161 + ABZR86_RS19140 0.19 +0.7
272,287 + ABZR86_RS19140 0.37 -0.1
272,425 + ABZR86_RS19140 0.56 -0.5
272,446 + ABZR86_RS19140 0.59 +0.2
272,446 + ABZR86_RS19140 0.59 +0.0

Or see this region's nucleotide sequence