Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16865

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16860 and ABZR86_RS16865 are separated by 109 nucleotidesABZR86_RS16865 and ABZR86_RS16870 overlap by 1 nucleotidesABZR86_RS16870 and ABZR86_RS16875 are separated by 59 nucleotides ABZR86_RS16860: ABZR86_RS16860 - TCR/Tet family MFS transporter, at 3,805,706 to 3,807,070 _RS16860 ABZR86_RS16865: ABZR86_RS16865 - EF-hand domain-containing protein, at 3,807,180 to 3,807,515 _RS16865 ABZR86_RS16870: ABZR86_RS16870 - GTP cyclohydrolase I FolE, at 3,807,515 to 3,808,114 _RS16870 ABZR86_RS16875: ABZR86_RS16875 - hypothetical protein, at 3,808,174 to 3,808,935 _RS16875 Position (kb) 3807 3808Strain fitness (log2 ratio) -1 0 1at 3806.314 kb on - strand, within ABZR86_RS16860at 3806.322 kb on + strand, within ABZR86_RS16860at 3806.323 kb on - strand, within ABZR86_RS16860at 3806.349 kb on + strand, within ABZR86_RS16860at 3806.349 kb on + strand, within ABZR86_RS16860at 3806.349 kb on + strand, within ABZR86_RS16860at 3806.350 kb on - strand, within ABZR86_RS16860at 3806.350 kb on - strand, within ABZR86_RS16860at 3806.350 kb on - strand, within ABZR86_RS16860at 3806.362 kb on - strand, within ABZR86_RS16860at 3806.362 kb on - strand, within ABZR86_RS16860at 3806.362 kb on - strand, within ABZR86_RS16860at 3806.558 kb on + strand, within ABZR86_RS16860at 3806.559 kb on - strand, within ABZR86_RS16860at 3806.679 kb on + strand, within ABZR86_RS16860at 3806.680 kb on - strand, within ABZR86_RS16860at 3807.161 kb on + strandat 3807.162 kb on - strandat 3807.373 kb on + strand, within ABZR86_RS16865at 3807.373 kb on + strand, within ABZR86_RS16865at 3807.373 kb on + strand, within ABZR86_RS16865at 3807.374 kb on - strand, within ABZR86_RS16865at 3807.374 kb on - strand, within ABZR86_RS16865at 3807.374 kb on - strand, within ABZR86_RS16865at 3807.382 kb on + strand, within ABZR86_RS16865at 3807.382 kb on + strand, within ABZR86_RS16865at 3807.382 kb on + strand, within ABZR86_RS16865at 3807.382 kb on + strand, within ABZR86_RS16865at 3807.383 kb on - strand, within ABZR86_RS16865at 3807.383 kb on - strand, within ABZR86_RS16865at 3807.433 kb on + strand, within ABZR86_RS16865at 3808.126 kb on - strandat 3808.126 kb on - strandat 3808.126 kb on - strandat 3808.149 kb on - strandat 3808.277 kb on + strand, within ABZR86_RS16875at 3808.281 kb on - strand, within ABZR86_RS16875at 3808.281 kb on - strand, within ABZR86_RS16875at 3808.291 kb on + strand, within ABZR86_RS16875at 3808.292 kb on - strand, within ABZR86_RS16875at 3808.292 kb on - strand, within ABZR86_RS16875at 3808.292 kb on - strand, within ABZR86_RS16875at 3808.347 kb on - strand, within ABZR86_RS16875at 3808.347 kb on - strand, within ABZR86_RS16875at 3808.469 kb on + strand, within ABZR86_RS16875at 3808.469 kb on + strand, within ABZR86_RS16875at 3808.470 kb on - strand, within ABZR86_RS16875

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,806,314 - ABZR86_RS16860 0.45 -0.1
3,806,322 + ABZR86_RS16860 0.45 +0.0
3,806,323 - ABZR86_RS16860 0.45 +0.5
3,806,349 + ABZR86_RS16860 0.47 +1.3
3,806,349 + ABZR86_RS16860 0.47 +0.2
3,806,349 + ABZR86_RS16860 0.47 +0.4
3,806,350 - ABZR86_RS16860 0.47 +0.8
3,806,350 - ABZR86_RS16860 0.47 -0.2
3,806,350 - ABZR86_RS16860 0.47 +0.3
3,806,362 - ABZR86_RS16860 0.48 +0.5
3,806,362 - ABZR86_RS16860 0.48 +0.2
3,806,362 - ABZR86_RS16860 0.48 +0.2
3,806,558 + ABZR86_RS16860 0.62 +0.2
3,806,559 - ABZR86_RS16860 0.62 +0.4
3,806,679 + ABZR86_RS16860 0.71 +0.0
3,806,680 - ABZR86_RS16860 0.71 +0.4
3,807,161 + -0.9
3,807,162 - -0.1
3,807,373 + ABZR86_RS16865 0.57 +0.6
3,807,373 + ABZR86_RS16865 0.57 +0.2
3,807,373 + ABZR86_RS16865 0.57 +0.1
3,807,374 - ABZR86_RS16865 0.58 +0.9
3,807,374 - ABZR86_RS16865 0.58 +0.0
3,807,374 - ABZR86_RS16865 0.58 +0.4
3,807,382 + ABZR86_RS16865 0.60 -0.1
3,807,382 + ABZR86_RS16865 0.60 +0.1
3,807,382 + ABZR86_RS16865 0.60 +0.1
3,807,382 + ABZR86_RS16865 0.60 +0.6
3,807,383 - ABZR86_RS16865 0.60 +0.7
3,807,383 - ABZR86_RS16865 0.60 +0.5
3,807,433 + ABZR86_RS16865 0.75 +0.2
3,808,126 - -0.2
3,808,126 - -0.2
3,808,126 - -0.2
3,808,149 - +0.1
3,808,277 + ABZR86_RS16875 0.14 -0.3
3,808,281 - ABZR86_RS16875 0.14 +0.1
3,808,281 - ABZR86_RS16875 0.14 -1.0
3,808,291 + ABZR86_RS16875 0.15 -0.1
3,808,292 - ABZR86_RS16875 0.15 +0.7
3,808,292 - ABZR86_RS16875 0.15 +0.4
3,808,292 - ABZR86_RS16875 0.15 +0.2
3,808,347 - ABZR86_RS16875 0.23 +0.1
3,808,347 - ABZR86_RS16875 0.23 -0.6
3,808,469 + ABZR86_RS16875 0.39 +0.2
3,808,469 + ABZR86_RS16875 0.39 -0.0
3,808,470 - ABZR86_RS16875 0.39 -0.2

Or see this region's nucleotide sequence