Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03160

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS03155 and ABZR86_RS03160 are separated by 612 nucleotidesABZR86_RS03160 and ABZR86_RS03165 are separated by 40 nucleotides ABZR86_RS03155: ABZR86_RS03155 - ATP-binding protein, at 647,567 to 648,817 _RS03155 ABZR86_RS03160: ABZR86_RS03160 - thiamine pyrophosphate-dependent enzyme, at 649,430 to 651,202 _RS03160 ABZR86_RS03165: ABZR86_RS03165 - hypothetical protein, at 651,243 to 653,348 _RS03165 Position (kb) 649 650 651 652Strain fitness (log2 ratio) -2 -1 0 1at 648.591 kb on + strand, within ABZR86_RS03155at 648.591 kb on + strand, within ABZR86_RS03155at 648.592 kb on - strand, within ABZR86_RS03155at 648.592 kb on - strand, within ABZR86_RS03155at 648.661 kb on - strand, within ABZR86_RS03155at 648.697 kb on - strandat 648.988 kb on + strandat 649.021 kb on + strandat 649.022 kb on - strandat 649.036 kb on + strandat 649.064 kb on + strandat 649.064 kb on + strandat 649.065 kb on - strandat 649.065 kb on - strandat 649.086 kb on + strandat 649.148 kb on - strandat 649.185 kb on + strandat 649.338 kb on + strandat 649.338 kb on + strandat 649.339 kb on - strandat 649.339 kb on - strandat 649.339 kb on - strandat 649.445 kb on - strandat 649.581 kb on + strandat 649.581 kb on + strandat 649.581 kb on + strandat 649.581 kb on + strandat 649.582 kb on - strandat 649.582 kb on - strandat 649.582 kb on - strandat 649.582 kb on - strandat 649.727 kb on + strand, within ABZR86_RS03160at 649.727 kb on + strand, within ABZR86_RS03160at 649.727 kb on + strand, within ABZR86_RS03160at 649.829 kb on + strand, within ABZR86_RS03160at 649.883 kb on + strand, within ABZR86_RS03160at 649.884 kb on - strand, within ABZR86_RS03160at 649.884 kb on - strand, within ABZR86_RS03160at 649.889 kb on + strand, within ABZR86_RS03160at 649.889 kb on + strand, within ABZR86_RS03160at 649.890 kb on - strand, within ABZR86_RS03160at 650.220 kb on - strand, within ABZR86_RS03160at 650.221 kb on + strand, within ABZR86_RS03160at 650.397 kb on - strand, within ABZR86_RS03160at 650.397 kb on - strand, within ABZR86_RS03160at 650.450 kb on + strand, within ABZR86_RS03160at 650.517 kb on - strand, within ABZR86_RS03160at 650.553 kb on - strand, within ABZR86_RS03160at 650.553 kb on - strand, within ABZR86_RS03160at 650.688 kb on - strand, within ABZR86_RS03160at 650.708 kb on + strand, within ABZR86_RS03160at 650.709 kb on - strand, within ABZR86_RS03160at 650.955 kb on - strand, within ABZR86_RS03160at 651.029 kb on + strandat 651.236 kb on + strandat 651.236 kb on + strandat 651.236 kb on + strandat 651.237 kb on - strandat 651.237 kb on - strandat 651.237 kb on - strandat 651.237 kb on - strandat 651.394 kb on - strandat 651.456 kb on + strand, within ABZR86_RS03165at 651.480 kb on + strand, within ABZR86_RS03165at 651.615 kb on + strand, within ABZR86_RS03165at 651.616 kb on - strand, within ABZR86_RS03165at 651.654 kb on + strand, within ABZR86_RS03165at 651.655 kb on - strand, within ABZR86_RS03165at 651.655 kb on - strand, within ABZR86_RS03165at 651.675 kb on + strand, within ABZR86_RS03165at 651.676 kb on - strand, within ABZR86_RS03165at 651.676 kb on - strand, within ABZR86_RS03165at 651.711 kb on + strand, within ABZR86_RS03165at 651.888 kb on + strand, within ABZR86_RS03165at 651.889 kb on - strand, within ABZR86_RS03165at 651.922 kb on - strand, within ABZR86_RS03165at 651.945 kb on + strand, within ABZR86_RS03165at 651.945 kb on + strand, within ABZR86_RS03165at 651.945 kb on + strand, within ABZR86_RS03165at 651.951 kb on + strand, within ABZR86_RS03165at 651.952 kb on - strand, within ABZR86_RS03165at 652.200 kb on + strand, within ABZR86_RS03165at 652.200 kb on + strand, within ABZR86_RS03165at 652.201 kb on - strand, within ABZR86_RS03165at 652.201 kb on - strand, within ABZR86_RS03165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
648,591 + ABZR86_RS03155 0.82 -1.6
648,591 + ABZR86_RS03155 0.82 -0.3
648,592 - ABZR86_RS03155 0.82 -0.8
648,592 - ABZR86_RS03155 0.82 +0.5
648,661 - ABZR86_RS03155 0.87 +0.1
648,697 - -0.1
648,988 + +0.9
649,021 + -0.0
649,022 - -1.1
649,036 + +0.0
649,064 + +0.3
649,064 + +0.1
649,065 - +0.6
649,065 - +0.5
649,086 + +0.3
649,148 - -0.1
649,185 + -0.1
649,338 + +0.5
649,338 + -0.1
649,339 - -0.0
649,339 - -0.5
649,339 - -0.3
649,445 - +0.0
649,581 + +0.4
649,581 + -0.4
649,581 + -0.8
649,581 + +0.5
649,582 - +0.1
649,582 - -0.3
649,582 - -0.7
649,582 - +0.1
649,727 + ABZR86_RS03160 0.17 -0.6
649,727 + ABZR86_RS03160 0.17 +0.0
649,727 + ABZR86_RS03160 0.17 +0.4
649,829 + ABZR86_RS03160 0.23 -1.4
649,883 + ABZR86_RS03160 0.26 +1.5
649,884 - ABZR86_RS03160 0.26 -0.6
649,884 - ABZR86_RS03160 0.26 -2.4
649,889 + ABZR86_RS03160 0.26 -0.1
649,889 + ABZR86_RS03160 0.26 +1.0
649,890 - ABZR86_RS03160 0.26 -0.5
650,220 - ABZR86_RS03160 0.45 +1.0
650,221 + ABZR86_RS03160 0.45 -0.2
650,397 - ABZR86_RS03160 0.55 +0.1
650,397 - ABZR86_RS03160 0.55 +0.5
650,450 + ABZR86_RS03160 0.58 -0.5
650,517 - ABZR86_RS03160 0.61 +0.2
650,553 - ABZR86_RS03160 0.63 +0.5
650,553 - ABZR86_RS03160 0.63 -0.1
650,688 - ABZR86_RS03160 0.71 +0.5
650,708 + ABZR86_RS03160 0.72 -0.2
650,709 - ABZR86_RS03160 0.72 +0.1
650,955 - ABZR86_RS03160 0.86 -0.6
651,029 + -0.0
651,236 + -0.6
651,236 + +0.1
651,236 + +0.7
651,237 - +1.0
651,237 - +0.2
651,237 - +0.3
651,237 - -1.1
651,394 - +0.2
651,456 + ABZR86_RS03165 0.10 +0.2
651,480 + ABZR86_RS03165 0.11 +0.1
651,615 + ABZR86_RS03165 0.18 +0.8
651,616 - ABZR86_RS03165 0.18 -0.3
651,654 + ABZR86_RS03165 0.20 +0.2
651,655 - ABZR86_RS03165 0.20 -0.1
651,655 - ABZR86_RS03165 0.20 +1.1
651,675 + ABZR86_RS03165 0.21 -0.3
651,676 - ABZR86_RS03165 0.21 +0.2
651,676 - ABZR86_RS03165 0.21 +0.3
651,711 + ABZR86_RS03165 0.22 +0.3
651,888 + ABZR86_RS03165 0.31 +0.5
651,889 - ABZR86_RS03165 0.31 -0.1
651,922 - ABZR86_RS03165 0.32 +0.6
651,945 + ABZR86_RS03165 0.33 +0.4
651,945 + ABZR86_RS03165 0.33 +0.5
651,945 + ABZR86_RS03165 0.33 +0.5
651,951 + ABZR86_RS03165 0.34 -0.9
651,952 - ABZR86_RS03165 0.34 -0.4
652,200 + ABZR86_RS03165 0.45 +0.1
652,200 + ABZR86_RS03165 0.45 -0.1
652,201 - ABZR86_RS03165 0.45 +0.0
652,201 - ABZR86_RS03165 0.45 -0.6

Or see this region's nucleotide sequence