Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00405 and ABZR86_RS00410 are separated by 127 nucleotides ABZR86_RS00410 and ABZR86_RS00415 are separated by 86 nucleotides ABZR86_RS00415 and ABZR86_RS00420 are separated by 76 nucleotides ABZR86_RS00420 and ABZR86_RS00425 overlap by 4 nucleotides
ABZR86_RS00405: ABZR86_RS00405 - DUF1345 domain-containing protein, at 78,188 to 78,865
_RS00405
ABZR86_RS00410: ABZR86_RS00410 - YajQ family cyclic di-GMP-binding protein, at 78,993 to 79,475
_RS00410
ABZR86_RS00415: ABZR86_RS00415 - NAD(P)/FAD-dependent oxidoreductase, at 79,562 to 80,740
_RS00415
ABZR86_RS00420: ABZR86_RS00420 - NAD(P)-dependent oxidoreductase, at 80,817 to 81,695
_RS00420
ABZR86_RS00425: ABZR86_RS00425 - YaiI/YqxD family protein, at 81,692 to 82,186
_RS00425
Position (kb) 79
80
81 Strain fitness (log2 ratio) -1
0
1 at 78.618 kb on - strand, within ABZR86_RS00405 at 78.630 kb on - strand, within ABZR86_RS00405 at 78.630 kb on - strand, within ABZR86_RS00405 at 78.693 kb on - strand, within ABZR86_RS00405 at 78.707 kb on + strand, within ABZR86_RS00405 at 78.767 kb on + strand, within ABZR86_RS00405 at 78.888 kb on - strand at 78.976 kb on - strand at 78.976 kb on - strand at 79.373 kb on + strand, within ABZR86_RS00410 at 79.569 kb on + strand at 79.575 kb on + strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.742 kb on + strand, within ABZR86_RS00415 at 79.743 kb on - strand, within ABZR86_RS00415 at 79.787 kb on + strand, within ABZR86_RS00415 at 80.104 kb on + strand, within ABZR86_RS00415 at 80.105 kb on - strand, within ABZR86_RS00415 at 80.203 kb on - strand, within ABZR86_RS00415 at 80.203 kb on - strand, within ABZR86_RS00415 at 80.294 kb on + strand, within ABZR86_RS00415 at 80.518 kb on - strand, within ABZR86_RS00415 at 80.642 kb on + strand at 80.642 kb on + strand at 80.642 kb on + strand at 80.642 kb on + strand at 80.642 kb on + strand at 80.643 kb on - strand at 80.643 kb on - strand at 80.643 kb on - strand at 80.643 kb on - strand at 80.643 kb on - strand at 80.687 kb on + strand at 80.687 kb on + strand at 80.688 kb on - strand at 80.793 kb on - strand at 80.812 kb on + strand at 80.812 kb on + strand at 80.813 kb on - strand at 81.153 kb on + strand, within ABZR86_RS00420 at 81.154 kb on - strand, within ABZR86_RS00420 at 81.209 kb on + strand, within ABZR86_RS00420 at 81.210 kb on - strand, within ABZR86_RS00420 at 81.525 kb on + strand, within ABZR86_RS00420 at 81.526 kb on - strand, within ABZR86_RS00420 at 81.694 kb on - strand at 81.694 kb on - strand at 81.694 kb on - strand at 81.700 kb on + strand at 81.700 kb on + strand at 81.701 kb on - strand at 81.701 kb on - strand at 81.701 kb on - strand at 81.701 kb on - strand at 81.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 78,618 - ABZR86_RS00405 0.63 -0.1 78,630 - ABZR86_RS00405 0.65 +0.1 78,630 - ABZR86_RS00405 0.65 +0.4 78,693 - ABZR86_RS00405 0.74 -0.6 78,707 + ABZR86_RS00405 0.77 +0.3 78,767 + ABZR86_RS00405 0.85 -0.2 78,888 - +0.3 78,976 - +1.2 78,976 - -1.0 79,373 + ABZR86_RS00410 0.79 +0.6 79,569 + +0.1 79,575 + +0.2 79,576 - -0.2 79,576 - -0.4 79,576 - +0.5 79,576 - -0.3 79,576 - -1.0 79,576 - -0.6 79,576 - -0.4 79,742 + ABZR86_RS00415 0.15 -0.7 79,743 - ABZR86_RS00415 0.15 +0.5 79,787 + ABZR86_RS00415 0.19 +0.2 80,104 + ABZR86_RS00415 0.46 -0.3 80,105 - ABZR86_RS00415 0.46 -0.9 80,203 - ABZR86_RS00415 0.54 -0.9 80,203 - ABZR86_RS00415 0.54 -0.5 80,294 + ABZR86_RS00415 0.62 -0.4 80,518 - ABZR86_RS00415 0.81 -0.6 80,642 + +0.1 80,642 + +0.2 80,642 + -0.5 80,642 + +0.0 80,642 + -0.1 80,643 - -0.1 80,643 - +0.7 80,643 - +1.1 80,643 - -0.4 80,643 - +0.5 80,687 + -0.3 80,687 + -0.3 80,688 - -0.1 80,793 - +0.2 80,812 + +0.6 80,812 + -0.8 80,813 - -0.8 81,153 + ABZR86_RS00420 0.38 -0.3 81,154 - ABZR86_RS00420 0.38 +0.7 81,209 + ABZR86_RS00420 0.45 -0.2 81,210 - ABZR86_RS00420 0.45 -0.4 81,525 + ABZR86_RS00420 0.81 -0.4 81,526 - ABZR86_RS00420 0.81 -0.2 81,694 - -0.3 81,694 - +0.3 81,694 - +0.2 81,700 + -0.9 81,700 + -0.2 81,701 - -0.3 81,701 - +0.5 81,701 - +0.6 81,701 - -0.2 81,701 - +0.3
Or see this region's nucleotide sequence