Strain Fitness in Shewanella loihica PV-4 around Shew_3221

Experiment: Carbenicillin 50 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 50 mg/ml
3,843,656	-		Shew_3220	0.41	-2.8
3,843,819	-		Shew_3220	0.61	-3.8
3,843,866	-		Shew_3220	0.67	-3.5
3,844,068	-				-2.7
3,844,092	+				-4.4
3,844,147	+				-4.0
3,844,169	+				-5.0
3,844,177	-				-4.2
3,844,189	-				-0.9
3,844,241	+				-2.4
3,844,249	-				-3.0
3,844,414	+				+0.2
3,844,501	-				+5.9
3,844,501	-				+5.8
3,844,501	-				+5.1
3,844,505	+				+0.3
3,844,505	+				+0.1
3,844,610	-				+5.5
3,844,628	+				+0.0
3,844,854	-		Shew_3221	0.27	+5.7
3,844,894	+		Shew_3221	0.30	+5.9
3,845,024	-		Shew_3221	0.42	+5.2
3,845,087	+		Shew_3221	0.47	+0.2
3,845,161	+		Shew_3221	0.53	+1.2
3,845,165	+		Shew_3221	0.54	+0.1
3,845,306	+		Shew_3221	0.66	-0.2
3,845,394	+		Shew_3221	0.73	-0.2
3,845,441	+		Shew_3221	0.77	+0.2
3,845,449	-		Shew_3221	0.78	+4.1
3,845,498	-		Shew_3221	0.82	+4.2
3,846,041	+		Shew_3222	0.43	+0.7
3,846,089	+		Shew_3222	0.51	+1.0
3,846,202	+		Shew_3222	0.70	+0.5
3,846,237	+		Shew_3222	0.75	+1.4
3,846,670	-		Shew_3223	0.14	+0.6