Experiment: Carbenicillin 50 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3204 and Shew_3205 are separated by 375 nucleotides Shew_3205 and Shew_3206 overlap by 4 nucleotides Shew_3206 and napG are separated by 58 nucleotides napG and napH overlap by 4 nucleotides
Shew_3204: Shew_3204 - cytochrome B561 (RefSeq), at 3,822,388 to 3,822,966
_3204
Shew_3205: Shew_3205 - NapD family protein (RefSeq), at 3,823,342 to 3,823,611
_3205
Shew_3206: Shew_3206 - nitrate reductase (RefSeq), at 3,823,608 to 3,826,091
_3206
Shew_3207: napG - quinol dehydrogenase periplasmic component (RefSeq), at 3,826,150 to 3,826,881
napG
Shew_3208: napH - quinol dehydrogenase membrane component (RefSeq), at 3,826,878 to 3,827,777
napH
Position (kb)
3823
3824
3825
3826
3827 Strain fitness (log2 ratio)
-2
-1
0
1 at 3822.693 kb on - strand, within Shew_3204 at 3822.711 kb on + strand, within Shew_3204 at 3822.719 kb on - strand, within Shew_3204 at 3822.865 kb on - strand, within Shew_3204 at 3823.966 kb on + strand, within Shew_3206 at 3823.982 kb on - strand, within Shew_3206 at 3824.055 kb on - strand, within Shew_3206 at 3824.371 kb on + strand, within Shew_3206 at 3824.379 kb on - strand, within Shew_3206 at 3824.379 kb on - strand, within Shew_3206 at 3824.506 kb on + strand, within Shew_3206 at 3824.506 kb on + strand, within Shew_3206 at 3824.506 kb on + strand, within Shew_3206 at 3824.514 kb on - strand, within Shew_3206 at 3824.514 kb on - strand, within Shew_3206 at 3824.514 kb on - strand, within Shew_3206 at 3824.514 kb on - strand, within Shew_3206 at 3824.678 kb on + strand, within Shew_3206 at 3824.719 kb on - strand, within Shew_3206 at 3824.901 kb on + strand, within Shew_3206 at 3824.926 kb on - strand, within Shew_3206 at 3824.928 kb on - strand, within Shew_3206 at 3825.023 kb on + strand, within Shew_3206 at 3825.134 kb on + strand, within Shew_3206 at 3825.274 kb on + strand, within Shew_3206 at 3825.477 kb on - strand, within Shew_3206 at 3825.577 kb on + strand, within Shew_3206 at 3825.788 kb on + strand, within Shew_3206 at 3825.788 kb on + strand, within Shew_3206 at 3826.027 kb on + strand at 3826.133 kb on + strand at 3826.366 kb on + strand, within napG at 3826.371 kb on + strand, within napG at 3826.372 kb on - strand, within napG at 3826.379 kb on - strand, within napG at 3826.414 kb on - strand, within napG at 3826.436 kb on + strand, within napG at 3826.474 kb on + strand, within napG at 3826.482 kb on - strand, within napG at 3826.482 kb on - strand, within napG at 3826.700 kb on - strand, within napG at 3826.776 kb on + strand, within napG at 3826.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml remove 3,822,693 - Shew_3204 0.53 +0.1 3,822,711 + Shew_3204 0.56 -0.5 3,822,719 - Shew_3204 0.57 -1.8 3,822,865 - Shew_3204 0.82 -0.9 3,823,966 + Shew_3206 0.14 -0.6 3,823,982 - Shew_3206 0.15 -0.0 3,824,055 - Shew_3206 0.18 +0.8 3,824,371 + Shew_3206 0.31 +0.9 3,824,379 - Shew_3206 0.31 +0.2 3,824,379 - Shew_3206 0.31 +1.4 3,824,506 + Shew_3206 0.36 -0.5 3,824,506 + Shew_3206 0.36 +0.6 3,824,506 + Shew_3206 0.36 +0.6 3,824,514 - Shew_3206 0.36 +0.5 3,824,514 - Shew_3206 0.36 -0.5 3,824,514 - Shew_3206 0.36 +0.4 3,824,514 - Shew_3206 0.36 -0.3 3,824,678 + Shew_3206 0.43 -0.2 3,824,719 - Shew_3206 0.45 -0.0 3,824,901 + Shew_3206 0.52 -0.3 3,824,926 - Shew_3206 0.53 +0.1 3,824,928 - Shew_3206 0.53 +0.1 3,825,023 + Shew_3206 0.57 -0.9 3,825,134 + Shew_3206 0.61 +0.3 3,825,274 + Shew_3206 0.67 -0.8 3,825,477 - Shew_3206 0.75 -0.1 3,825,577 + Shew_3206 0.79 +0.3 3,825,788 + Shew_3206 0.88 -0.1 3,825,788 + Shew_3206 0.88 -0.0 3,826,027 + +1.0 3,826,133 + +0.2 3,826,366 + napG Shew_3207 0.30 -0.9 3,826,371 + napG Shew_3207 0.30 -0.0 3,826,372 - napG Shew_3207 0.30 +0.1 3,826,379 - napG Shew_3207 0.31 -2.5 3,826,414 - napG Shew_3207 0.36 -0.2 3,826,436 + napG Shew_3207 0.39 +0.1 3,826,474 + napG Shew_3207 0.44 +0.4 3,826,482 - napG Shew_3207 0.45 -0.3 3,826,482 - napG Shew_3207 0.45 +1.0 3,826,700 - napG Shew_3207 0.75 +0.4 3,826,776 + napG Shew_3207 0.86 -0.0 3,826,847 + -0.2
Or see this region's nucleotide sequence