Strain Fitness in Shewanella loihica PV-4 around Shew_2841

Experiment: Carbenicillin 50 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2840 and Shew_2841 are separated by 96 nucleotidesShew_2841 and Shew_2842 are separated by 80 nucleotides Shew_2840: Shew_2840 - dihydrodipicolinate reductase (RefSeq), at 3,367,447 to 3,368,262 _2840 Shew_2841: Shew_2841 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 3,368,359 to 3,368,976 _2841 Shew_2842: Shew_2842 - peptidase M48, Ste24p (RefSeq), at 3,369,057 to 3,369,845 _2842 Position (kb) 3368 3369Strain fitness (log2 ratio) -2 -1 0 1at 3368.564 kb on - strand, within Shew_2841at 3368.957 kb on - strandat 3369.218 kb on + strand, within Shew_2842at 3369.423 kb on - strand, within Shew_2842at 3369.461 kb on + strand, within Shew_2842at 3369.481 kb on - strand, within Shew_2842at 3369.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml
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3,368,564 - Shew_2841 0.33 +0.6
3,368,957 - -0.1
3,369,218 + Shew_2842 0.20 -2.1
3,369,423 - Shew_2842 0.46 -0.5
3,369,461 + Shew_2842 0.51 -1.1
3,369,481 - Shew_2842 0.54 -0.1
3,369,921 - +0.6

Or see this region's nucleotide sequence