Strain Fitness in Shewanella loihica PV-4 around Shew_2648

Experiment: Carbenicillin 50 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2647 and Shew_2648 overlap by 8 nucleotidesShew_2648 and Shew_2649 are separated by 140 nucleotidesShew_2649 and Shew_2650 are separated by 149 nucleotides Shew_2647: Shew_2647 - hypothetical protein (RefSeq), at 3,123,264 to 3,123,563 _2647 Shew_2648: Shew_2648 - GCN5-related N-acetyltransferase (RefSeq), at 3,123,556 to 3,124,206 _2648 Shew_2649: Shew_2649 - hypothetical protein (RefSeq), at 3,124,347 to 3,124,577 _2649 Shew_2650: Shew_2650 - hypothetical protein (RefSeq), at 3,124,727 to 3,125,098 _2650 Position (kb) 3123 3124 3125Strain fitness (log2 ratio) -2 -1 0 1 2at 3123.641 kb on + strand, within Shew_2648at 3123.991 kb on + strand, within Shew_2648at 3124.190 kb on - strandat 3124.222 kb on + strandat 3124.307 kb on + strandat 3124.875 kb on + strand, within Shew_2650at 3124.883 kb on - strand, within Shew_2650at 3125.009 kb on - strand, within Shew_2650at 3125.055 kb on - strand, within Shew_2650at 3125.055 kb on - strand, within Shew_2650

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml
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3,123,641 + Shew_2648 0.13 +1.8
3,123,991 + Shew_2648 0.67 +1.2
3,124,190 - +0.4
3,124,222 + +0.0
3,124,307 + +0.2
3,124,875 + Shew_2650 0.40 +0.8
3,124,883 - Shew_2650 0.42 -2.0
3,125,009 - Shew_2650 0.76 +0.1
3,125,055 - Shew_2650 0.88 -0.2
3,125,055 - Shew_2650 0.88 +0.2

Or see this region's nucleotide sequence