Strain Fitness in Shewanella loihica PV-4 around Shew_2585

Experiment: Carbenicillin 50 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 50 mg/ml
3,048,641	+		Shew_2584	0.16	+0.6
3,048,678	+		Shew_2584	0.21	-1.5
3,048,684	-		Shew_2584	0.22	+0.2
3,048,746	-		Shew_2584	0.30	+0.6
3,048,768	+		Shew_2584	0.33	+0.7
3,048,835	-		Shew_2584	0.42	+0.5
3,049,039	+		Shew_2584	0.69	+0.1
3,049,182	-		Shew_2584	0.88	+0.8
3,049,208	+				-0.2
3,049,208	+				+0.1
3,049,209	+				+0.7
3,049,214	+				+0.8
3,049,278	+				+0.2
3,049,350	+				+0.2
3,049,358	-				+0.0
3,049,358	-				-0.0
3,049,386	+				-0.2
3,049,396	+				-0.1
3,049,405	-				+0.2
3,049,405	-				+0.5
3,049,411	+				+0.1
3,049,411	+				-0.0
3,049,411	+				-2.2
3,049,418	+				-0.8
3,049,419	-				+0.1
3,049,419	-				+1.0
3,049,419	-				+1.0
3,049,419	-				-0.4
3,049,426	-				+1.5
3,049,426	-				+0.3
3,049,426	-				+0.7
3,049,533	+				-1.2
3,049,536	+				-3.1
3,049,536	+				-0.6
3,049,544	-				+0.8
3,049,544	-				-2.0
3,049,569	+				-3.2
3,049,569	+				-3.0
3,049,620	+				-3.7
3,049,620	+				-5.3
3,049,627	+		Shew_2585	0.11	-3.7
3,049,663	+		Shew_2585	0.21	-4.0
3,049,694	+		Shew_2585	0.28	-4.6
3,049,704	+		Shew_2585	0.31	-0.8
3,049,714	+		Shew_2585	0.34	-6.3
3,049,714	+		Shew_2585	0.34	-2.8
3,049,714	+		Shew_2585	0.34	-1.2
3,049,714	+		Shew_2585	0.34	-0.8
3,049,714	+		Shew_2585	0.34	-3.3
3,049,729	+		Shew_2585	0.37	-4.4
3,049,735	+		Shew_2585	0.39	-2.5
3,049,752	+		Shew_2585	0.43	-3.3
3,049,773	+		Shew_2585	0.49	-2.4
3,049,781	+		Shew_2585	0.51	-4.2
3,049,911	+		Shew_2585	0.84	-3.5
3,049,913	+		Shew_2585	0.84	-4.4
3,049,969	+				-0.9
3,049,969	+				-0.5
3,049,977	-				+0.2
3,049,977	-				-2.0
3,049,987	+				-0.8
3,049,988	+				-0.6
3,049,988	+				-0.3
3,049,996	-				-0.8
3,049,996	-				-1.8
3,049,996	-				-0.8
3,050,001	-				-0.8
3,050,014	+				-0.3
3,050,015	+				-1.0
3,050,015	+				-2.2
3,050,022	-				-0.2
3,050,023	-				-2.0
3,050,023	-				+0.1
3,050,023	-				-1.0
3,050,070	+				+0.5
3,050,071	-				+0.0
3,050,083	+				-0.9
3,050,088	+				+0.9
3,050,088	+				+0.5
3,050,088	+				+0.1
3,050,091	-				-0.0
3,050,093	+				+0.8
3,050,096	-				+0.1
3,050,096	-				+0.1
3,050,096	-				+0.5
3,050,096	-				+0.8
3,050,099	+				+1.0
3,050,106	-				-0.2
3,050,107	-				-0.8
3,050,107	-				+1.0
3,050,135	+				+0.4
3,050,151	-				+0.6
3,050,153	-				+0.5
3,050,155	+				+1.1
3,050,155	+				+0.9
3,050,155	+				+0.2
3,050,156	-				-1.2
3,050,163	-				+0.5
3,050,183	+				+0.4
3,050,183	+				-0.5
3,050,186	-				-0.9
3,050,193	+				+0.9
3,050,193	+				-0.2
3,050,194	+				+0.2
3,050,202	-				-0.1
3,050,207	-				-0.0
3,050,212	+				-0.5
3,050,213	+				-0.3
3,050,213	+				-0.2
3,050,213	+				-0.5
3,050,213	+				-0.3
3,050,213	+				+0.5
3,050,218	+				+0.4
3,050,218	+				+1.5
3,050,218	+				-1.0
3,050,218	+				+1.4
3,050,218	+				+0.0
3,050,218	+				-0.2
3,050,218	+				+1.7
3,050,218	+				+0.8
3,050,221	-				+0.2
3,050,221	-				-0.6
3,050,221	-				+0.6
3,050,223	+				+1.0
3,050,226	-				+0.0
3,050,226	-				-0.1
3,050,226	-				+0.6
3,050,226	-				-0.2
3,050,226	-				+0.1
3,050,226	-				+0.2
3,050,226	-				+0.1
3,050,231	-				+1.5
3,050,231	-				+0.3
3,050,231	-				+0.5
3,050,231	-				+0.7
3,050,241	+				-2.4
3,050,251	+				-0.4
3,050,251	+				-0.2
3,050,251	+				+0.2
3,050,259	-				-0.1
3,050,259	-				-0.9
3,050,280	+				+0.2
3,050,281	+				+0.4
3,050,286	+				+0.2
3,050,368	+				+1.1
3,050,376	-				-0.0
3,050,382	-				+0.0
3,050,382	-				+0.7
3,050,442	+				+1.1
3,050,442	+				-0.5
3,050,442	+				+0.3
3,050,442	+				+0.9
3,050,442	+				+0.1
3,050,442	+				-0.8
3,050,442	+				+0.0
3,050,442	+				+1.3
3,050,442	+				-0.2
3,050,442	+				-1.0
3,050,445	-				-2.0
3,050,445	-				+0.2
3,050,450	-				-0.4
3,050,450	-				+0.4
3,050,450	-				+0.6
3,050,450	-				+0.9
3,050,450	-				-0.1
3,050,450	-				-0.1
3,050,450	-				-0.0
3,050,450	-				-0.3
3,050,450	-				+0.3
3,050,450	-				+0.1
3,050,450	-				+1.2
3,050,450	-				+1.7
3,050,450	-				+0.3
3,050,450	-				-0.4
3,050,450	-				+0.2
3,050,452	+				+0.2
3,050,452	+				+1.7
3,050,452	+				-1.5
3,050,452	+				+0.1
3,050,452	+				+0.3
3,050,460	-				-1.1
3,050,460	-				-0.9
3,050,460	-				+0.3
3,050,473	-				+1.0
3,050,484	-				-0.6
3,050,484	-				-0.0
3,050,484	+				-0.0
3,050,494	-				-0.9
3,050,502	-				+0.4
3,050,604	+				+0.7
3,050,712	-		Shew_2586	0.12	-0.2
3,050,712	+		Shew_2586	0.12	+0.1
3,050,716	+		Shew_2586	0.12	-0.2
3,050,716	+		Shew_2586	0.12	+0.1
3,050,722	-		Shew_2586	0.13	+0.2
3,050,829	+		Shew_2586	0.16	-0.1
3,050,839	+		Shew_2586	0.16	-0.1
3,050,841	-		Shew_2586	0.16	+0.5
3,050,884	+		Shew_2586	0.18	+0.3
3,050,896	+		Shew_2586	0.18	+0.1
3,050,904	-		Shew_2586	0.18	-0.1
3,050,908	+		Shew_2586	0.18	+1.1
3,050,916	-		Shew_2586	0.19	-0.1
3,050,918	+		Shew_2586	0.19	+0.2
3,050,928	+		Shew_2586	0.19	+0.3
3,050,928	+		Shew_2586	0.19	+0.5
3,050,936	-		Shew_2586	0.19	-0.5
3,050,949	+		Shew_2586	0.20	+0.7
3,050,954	+		Shew_2586	0.20	+0.6
3,050,974	+		Shew_2586	0.21	+0.2
3,050,974	+		Shew_2586	0.21	-0.4