Strain Fitness in Shewanella loihica PV-4 around Shew_2065

Experiment: Carbenicillin 50 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_R0074 and Shew_R0075 are separated by 42 nucleotidesShew_R0075 and Shew_R0076 are separated by 26 nucleotidesShew_R0076 and Shew_R0077 are separated by 24 nucleotidesShew_R0077 and Shew_2065 are separated by 116 nucleotidesShew_2065 and Shew_2066 are separated by 83 nucleotidesShew_2066 and Shew_2067 are separated by 2 nucleotides Shew_R0074: Shew_R0074 - tRNA-Asn (RefSeq), at 2,385,603 to 2,385,678 _R0074 Shew_R0075: Shew_R0075 - tRNA-Asn (RefSeq), at 2,385,721 to 2,385,796 _R0075 Shew_R0076: Shew_R0076 - tRNA-Asn (RefSeq), at 2,385,823 to 2,385,898 _R0076 Shew_R0077: Shew_R0077 - tRNA-Asn (RefSeq), at 2,385,923 to 2,385,998 _R0077 Shew_2065: Shew_2065 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,386,115 to 2,388,043 _2065 Shew_2066: Shew_2066 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 2,388,127 to 2,388,705 _2066 Shew_2067: Shew_2067 - electron transport complex, RnfABCDGE type, B subunit (RefSeq), at 2,388,708 to 2,389,277 _2067 Position (kb) 2386 2387 2388 2389Strain fitness (log2 ratio) -1 0 1at 2385.307 kb on + strandat 2385.371 kb on + strandat 2385.393 kb on + strandat 2385.881 kb on + strand, within Shew_R0076at 2386.613 kb on + strand, within Shew_2065at 2386.752 kb on - strand, within Shew_2065at 2386.759 kb on + strand, within Shew_2065at 2387.466 kb on + strand, within Shew_2065at 2387.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml
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2,385,307 + -0.5
2,385,371 + +0.8
2,385,393 + +0.3
2,385,881 + Shew_R0076 0.76 -0.2
2,386,613 + Shew_2065 0.26 +0.5
2,386,752 - Shew_2065 0.33 +0.2
2,386,759 + Shew_2065 0.33 +0.3
2,387,466 + Shew_2065 0.70 +0.7
2,387,971 - +0.2

Or see this region's nucleotide sequence