Strain Fitness in Shewanella loihica PV-4 around Shew_1869
Experiment: Carbenicillin 50 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Carbenicillin 50 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,146,863 | - | Shew_1868 | 0.63 | +0.0 | |
| 2,146,868 | - | Shew_1868 | 0.63 | -0.2 | |
| 2,147,856 | - | -3.4 | |||
| 2,147,858 | + | +0.0 | |||
| 2,147,925 | + | -0.7 | |||
| 2,147,982 | + | Shew_1869 | 0.17 | +0.4 | |
| 2,148,129 | - | Shew_1869 | 0.39 | +0.7 | |
| 2,148,422 | + | Shew_1869 | 0.81 | +0.8 | |
| 2,148,741 | - | Shew_1870 | 0.12 | -0.1 | |
| 2,148,811 | - | Shew_1870 | 0.19 | +0.6 | |
| 2,148,935 | - | Shew_1870 | 0.31 | +0.0 | |
| 2,148,950 | - | Shew_1870 | 0.32 | +0.2 |
Or see this region's nucleotide sequence