Strain Fitness in Shewanella loihica PV-4 around Shew_1869

Experiment: Carbenicillin 50 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1868 and Shew_1869 are separated by 392 nucleotidesShew_1869 and Shew_1870 are separated by 64 nucleotides Shew_1868: Shew_1868 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,145,832 to 2,147,469 _1868 Shew_1869: Shew_1869 - hypothetical protein (RefSeq), at 2,147,862 to 2,148,554 _1869 Shew_1870: Shew_1870 - LacI family transcription regulator (RefSeq), at 2,148,619 to 2,149,647 _1870 Position (kb) 2147 2148 2149Strain fitness (log2 ratio) -3 -2 -1 0 1at 2146.863 kb on - strand, within Shew_1868at 2146.868 kb on - strand, within Shew_1868at 2147.856 kb on - strandat 2147.858 kb on + strandat 2147.925 kb on + strandat 2147.982 kb on + strand, within Shew_1869at 2148.129 kb on - strand, within Shew_1869at 2148.422 kb on + strand, within Shew_1869at 2148.741 kb on - strand, within Shew_1870at 2148.811 kb on - strand, within Shew_1870at 2148.935 kb on - strand, within Shew_1870at 2148.950 kb on - strand, within Shew_1870

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml
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2,146,863 - Shew_1868 0.63 +0.0
2,146,868 - Shew_1868 0.63 -0.2
2,147,856 - -3.4
2,147,858 + +0.0
2,147,925 + -0.7
2,147,982 + Shew_1869 0.17 +0.4
2,148,129 - Shew_1869 0.39 +0.7
2,148,422 + Shew_1869 0.81 +0.8
2,148,741 - Shew_1870 0.12 -0.1
2,148,811 - Shew_1870 0.19 +0.6
2,148,935 - Shew_1870 0.31 +0.0
2,148,950 - Shew_1870 0.32 +0.2

Or see this region's nucleotide sequence