Strain Fitness in Shewanella loihica PV-4 around Shew_1575

Experiment: Carbenicillin 50 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1574 and Shew_1575 are separated by 12 nucleotidesShew_1575 and dcd are separated by 27 nucleotidesdcd and Shew_1577 overlap by 1 nucleotides Shew_1574: Shew_1574 - ATP-binding Mrp/Nbp35 family protein (RefSeq), at 1,805,042 to 1,806,154 _1574 Shew_1575: Shew_1575 - uridine kinase (RefSeq), at 1,806,167 to 1,806,802 _1575 Shew_1576: dcd - deoxycytidine triphosphate deaminase (RefSeq), at 1,806,830 to 1,807,414 dcd Shew_1577: Shew_1577 - aminotransferase, class IV (RefSeq), at 1,807,414 to 1,808,247 _1577 Position (kb) 1806 1807Strain fitness (log2 ratio) -1 0 1 2at 1805.203 kb on + strand, within Shew_1574at 1805.545 kb on + strand, within Shew_1574at 1806.265 kb on + strand, within Shew_1575at 1806.311 kb on + strand, within Shew_1575at 1806.779 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml
remove
1,805,203 + Shew_1574 0.14 +1.8
1,805,545 + Shew_1574 0.45 +1.1
1,806,265 + Shew_1575 0.15 +1.4
1,806,311 + Shew_1575 0.23 +2.3
1,806,779 + +0.7

Or see this region's nucleotide sequence