Experiment: Carbenicillin 50 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1516 and Shew_1517 are separated by 135 nucleotides Shew_1517 and Shew_1518 are separated by 281 nucleotides Shew_1518 and Shew_1519 are separated by 151 nucleotides
Shew_1516: Shew_1516 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 1,739,339 to 1,739,944
_1516
Shew_1517: Shew_1517 - putative adenylyl cyclase CyaB (RefSeq), at 1,740,080 to 1,740,661
_1517
Shew_1518: Shew_1518 - hypothetical protein (RefSeq), at 1,740,943 to 1,741,689
_1518
Shew_1519: Shew_1519 - hypothetical protein (RefSeq), at 1,741,841 to 1,742,857
_1519
Position (kb) 1740
1741
1742 Strain fitness (log2 ratio) -1
0
1 at 1740.325 kb on + strand, within Shew_1517 at 1740.421 kb on - strand, within Shew_1517 at 1740.421 kb on - strand, within Shew_1517 at 1740.612 kb on + strand at 1740.839 kb on + strand at 1741.011 kb on + strand at 1741.595 kb on - strand, within Shew_1518 at 1741.613 kb on + strand, within Shew_1518 at 1742.196 kb on - strand, within Shew_1519 at 1742.511 kb on - strand, within Shew_1519 at 1742.543 kb on - strand, within Shew_1519
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml remove 1,740,325 + Shew_1517 0.42 +0.0 1,740,421 - Shew_1517 0.59 -0.5 1,740,421 - Shew_1517 0.59 +1.7 1,740,612 + -0.9 1,740,839 + +0.4 1,741,011 + -0.0 1,741,595 - Shew_1518 0.87 +0.9 1,741,613 + Shew_1518 0.90 +1.1 1,742,196 - Shew_1519 0.35 +0.8 1,742,511 - Shew_1519 0.66 +0.2 1,742,543 - Shew_1519 0.69 +0.2
Or see this region's nucleotide sequence