Strain Fitness in Shewanella loihica PV-4 around Shew_1254

Experiment: Carbenicillin 50 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 50 mg/ml
1,451,416	+				+0.3
1,451,416	+				-1.8
1,451,476	+				+0.1
1,451,532	+				+0.1
1,451,540	-				-0.3
1,451,559	-				-1.0
1,451,683	-		Shew_1253	0.17	+2.0
1,451,806	+		Shew_1253	0.33	+0.1
1,451,811	+		Shew_1253	0.34	-1.1
1,451,814	-		Shew_1253	0.35	+0.3
1,451,814	-		Shew_1253	0.35	+0.6
1,451,814	-		Shew_1253	0.35	-0.3
1,451,819	-		Shew_1253	0.35	+0.0
1,451,922	+		Shew_1253	0.49	+1.0
1,451,931	+		Shew_1253	0.51	-1.1
1,452,127	-		Shew_1253	0.78	+0.3
1,452,228	+				+0.9
1,452,228	+				+0.5
1,452,228	+				-0.3
1,452,310	+				+0.1
1,452,320	+				-0.4
1,452,333	+				+0.2
1,452,346	-				-0.3
1,452,536	+		Shew_1254	0.31	+0.4
1,452,794	+		Shew_1254	0.77	+0.3
1,452,804	+		Shew_1254	0.79	-0.0
1,452,804	+		Shew_1254	0.79	+3.1
1,453,488	-				-0.1
1,453,622	+		Shew_1256	0.29	-0.0
1,453,630	-		Shew_1256	0.32	+0.5
1,453,697	-		Shew_1256	0.50	+0.0
1,453,708	+		Shew_1256	0.53	+0.2
1,453,708	+		Shew_1256	0.53	+0.3
1,453,716	-		Shew_1256	0.55	-0.3
1,453,781	+		Shew_1256	0.73	+0.5
1,453,795	-		Shew_1256	0.77	+0.3
1,453,833	-		Shew_1256	0.88	+0.1
1,453,833	-		Shew_1256	0.88	+0.8