Strain Fitness in Shewanella loihica PV-4 around Shew_0877

Experiment: Carbenicillin 50 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0876 and apaH are separated by 104 nucleotidesapaH and apaG are separated by 26 nucleotidesapaG and ksgA are separated by 51 nucleotides Shew_0876: Shew_0876 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 994,888 to 996,912 _0876 Shew_0877: apaH - diadenosine tetraphosphatase (RefSeq), at 997,017 to 997,841 apaH Shew_0878: apaG - ApaG (RefSeq), at 997,868 to 998,248 apaG Shew_0879: ksgA - dimethyladenosine transferase (RefSeq), at 998,300 to 999,109 ksgA Position (kb) 997 998Strain fitness (log2 ratio) -1 0 1 2at 996.115 kb on - strand, within Shew_0876at 996.167 kb on + strand, within Shew_0876at 996.312 kb on + strand, within Shew_0876at 996.312 kb on + strand, within Shew_0876at 997.140 kb on + strand, within apaHat 997.320 kb on - strand, within apaHat 997.448 kb on - strand, within apaHat 997.458 kb on - strand, within apaHat 997.615 kb on - strand, within apaH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml
remove
996,115 - Shew_0876 0.61 +0.0
996,167 + Shew_0876 0.63 +0.2
996,312 + Shew_0876 0.70 -0.4
996,312 + Shew_0876 0.70 -0.3
997,140 + apaH Shew_0877 0.15 +1.3
997,320 - apaH Shew_0877 0.37 -0.3
997,448 - apaH Shew_0877 0.52 +0.3
997,458 - apaH Shew_0877 0.53 +2.2
997,615 - apaH Shew_0877 0.72 +0.5

Or see this region's nucleotide sequence