Experiment: Carbenicillin 50 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0845 and Shew_0846 are separated by 252 nucleotides Shew_0846 and Shew_0847 are separated by 12 nucleotides Shew_0847 and Shew_0848 are separated by 119 nucleotides Shew_0848 and Shew_0849 are separated by 92 nucleotides
Shew_0845: Shew_0845 - isochorismatase hydrolase (RefSeq), at 968,589 to 969,131
_0845
Shew_0846: Shew_0846 - nitrogen regulatory protein P-II (RefSeq), at 969,384 to 969,722
_0846
Shew_0847: Shew_0847 - Rh family protein/ammonium transporter (RefSeq), at 969,735 to 970,985
_0847
Shew_0848: Shew_0848 - hypothetical protein (RefSeq), at 971,105 to 971,431
_0848
Shew_0849: Shew_0849 - TPR repeat-containing protein (RefSeq), at 971,524 to 972,705
_0849
Position (kb) 969
970
971 Strain fitness (log2 ratio) -1
0
1 at 968.762 kb on + strand, within Shew_0845 at 968.981 kb on + strand, within Shew_0845 at 969.098 kb on - strand at 969.379 kb on - strand at 969.447 kb on + strand, within Shew_0846 at 969.505 kb on + strand, within Shew_0846 at 969.564 kb on - strand, within Shew_0846 at 970.128 kb on - strand, within Shew_0847 at 970.337 kb on + strand, within Shew_0847 at 970.354 kb on + strand, within Shew_0847 at 970.383 kb on - strand, within Shew_0847 at 970.383 kb on - strand, within Shew_0847 at 970.704 kb on - strand, within Shew_0847 at 970.805 kb on + strand, within Shew_0847 at 971.095 kb on - strand at 971.299 kb on - strand, within Shew_0848 at 971.501 kb on + strand at 971.509 kb on - strand at 971.795 kb on - strand, within Shew_0849 at 971.857 kb on - strand, within Shew_0849 at 971.984 kb on - strand, within Shew_0849
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml remove 968,762 + Shew_0845 0.32 +0.0 968,981 + Shew_0845 0.72 -0.3 969,098 - -0.1 969,379 - -0.2 969,447 + Shew_0846 0.19 +0.4 969,505 + Shew_0846 0.36 +0.5 969,564 - Shew_0846 0.53 -0.1 970,128 - Shew_0847 0.31 +0.6 970,337 + Shew_0847 0.48 +0.4 970,354 + Shew_0847 0.49 +0.1 970,383 - Shew_0847 0.52 +0.9 970,383 - Shew_0847 0.52 +1.0 970,704 - Shew_0847 0.77 +0.0 970,805 + Shew_0847 0.86 +0.0 971,095 - +0.2 971,299 - Shew_0848 0.59 +0.7 971,501 + -0.3 971,509 - +0.3 971,795 - Shew_0849 0.23 +0.1 971,857 - Shew_0849 0.28 -1.1 971,984 - Shew_0849 0.39 -0.1
Or see this region's nucleotide sequence