Experiment: Carbenicillin 50 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0682 and Shew_0683 overlap by 11 nucleotides Shew_0683 and Shew_0684 are separated by 397 nucleotides Shew_0684 and Shew_0685 are separated by 66 nucleotides
Shew_0682: Shew_0682 - major facilitator superfamily permease (RefSeq), at 776,330 to 777,433
_0682
Shew_0683: Shew_0683 - secretion protein HlyD family protein (RefSeq), at 777,423 to 778,487
_0683
Shew_0684: Shew_0684 - hypothetical protein (RefSeq), at 778,885 to 779,292
_0684
Shew_0685: Shew_0685 - hypothetical protein (RefSeq), at 779,359 to 780,066
_0685
Position (kb) 777
778
779 Strain fitness (log2 ratio) -2
-1
0
1 at 776.555 kb on - strand, within Shew_0682 at 776.737 kb on - strand, within Shew_0682 at 777.027 kb on - strand, within Shew_0682 at 777.492 kb on - strand at 777.494 kb on + strand at 777.497 kb on - strand at 777.499 kb on + strand at 777.505 kb on - strand at 777.507 kb on - strand at 777.746 kb on + strand, within Shew_0683 at 777.836 kb on + strand, within Shew_0683 at 777.836 kb on + strand, within Shew_0683 at 777.844 kb on - strand, within Shew_0683 at 777.844 kb on - strand, within Shew_0683 at 777.844 kb on - strand, within Shew_0683 at 777.844 kb on - strand, within Shew_0683 at 777.880 kb on + strand, within Shew_0683 at 777.954 kb on + strand, within Shew_0683 at 778.061 kb on - strand, within Shew_0683 at 778.313 kb on + strand, within Shew_0683 at 778.359 kb on + strand, within Shew_0683 at 778.359 kb on + strand, within Shew_0683 at 778.388 kb on - strand at 778.664 kb on + strand at 778.982 kb on + strand, within Shew_0684 at 779.027 kb on - strand, within Shew_0684 at 779.238 kb on + strand, within Shew_0684 at 779.286 kb on + strand at 779.286 kb on + strand at 779.286 kb on + strand at 779.294 kb on - strand at 779.404 kb on + strand at 779.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml remove 776,555 - Shew_0682 0.20 +0.0 776,737 - Shew_0682 0.37 -0.2 777,027 - Shew_0682 0.63 -0.6 777,492 - +0.2 777,494 + -0.0 777,497 - -0.5 777,499 + -0.1 777,505 - -2.0 777,507 - -0.2 777,746 + Shew_0683 0.30 +0.0 777,836 + Shew_0683 0.39 -0.2 777,836 + Shew_0683 0.39 +0.1 777,844 - Shew_0683 0.40 -0.2 777,844 - Shew_0683 0.40 -0.1 777,844 - Shew_0683 0.40 +0.2 777,844 - Shew_0683 0.40 -0.0 777,880 + Shew_0683 0.43 -0.0 777,954 + Shew_0683 0.50 -0.8 778,061 - Shew_0683 0.60 +0.3 778,313 + Shew_0683 0.84 -0.6 778,359 + Shew_0683 0.88 -0.6 778,359 + Shew_0683 0.88 -0.8 778,388 - +0.0 778,664 + -1.0 778,982 + Shew_0684 0.24 -0.4 779,027 - Shew_0684 0.35 -0.1 779,238 + Shew_0684 0.87 -1.0 779,286 + -0.1 779,286 + +0.1 779,286 + -0.0 779,294 - +0.0 779,404 + +0.4 779,414 + -0.9
Or see this region's nucleotide sequence