Experiment: Carbenicillin 50 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0593 and Shew_0594 are separated by 174 nucleotides Shew_0594 and Shew_0595 are separated by 65 nucleotides Shew_0595 and Shew_0596 are separated by 100 nucleotides
Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896
_0593
Shew_0594: Shew_0594 - hypothetical protein (RefSeq), at 672,071 to 672,271
_0594
Shew_0595: Shew_0595 - hypothetical protein (RefSeq), at 672,337 to 672,648
_0595
Shew_0596: Shew_0596 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 672,749 to 674,671
_0596
Position (kb) 672
673 Strain fitness (log2 ratio) -2
-1
0
1 at 671.169 kb on + strand, within Shew_0593 at 671.181 kb on + strand, within Shew_0593 at 671.595 kb on + strand, within Shew_0593 at 671.603 kb on - strand, within Shew_0593 at 671.603 kb on - strand, within Shew_0593 at 671.730 kb on + strand at 671.739 kb on + strand at 671.954 kb on + strand at 672.136 kb on + strand, within Shew_0594 at 672.136 kb on + strand, within Shew_0594 at 672.219 kb on - strand, within Shew_0594 at 672.267 kb on - strand at 672.516 kb on + strand, within Shew_0595 at 672.982 kb on - strand, within Shew_0596
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml remove 671,169 + Shew_0593 0.62 +0.0 671,181 + Shew_0593 0.63 +0.1 671,595 + Shew_0593 0.84 +0.4 671,603 - Shew_0593 0.85 +0.2 671,603 - Shew_0593 0.85 -1.5 671,730 + -0.0 671,739 + +0.2 671,954 + -0.1 672,136 + Shew_0594 0.32 +0.4 672,136 + Shew_0594 0.32 +0.4 672,219 - Shew_0594 0.74 +1.5 672,267 - -2.2 672,516 + Shew_0595 0.57 +0.1 672,982 - Shew_0596 0.12 +0.5
Or see this region's nucleotide sequence