Strain Fitness in Shewanella loihica PV-4 around Shew_0461

Experiment: Carbenicillin 50 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0460 and Shew_0461 are separated by 72 nucleotidesShew_0461 and Shew_0462 are separated by 312 nucleotidesShew_0462 and Shew_0463 are separated by 118 nucleotides Shew_0460: Shew_0460 - hypothetical protein (RefSeq), at 516,184 to 518,583 _0460 Shew_0461: Shew_0461 - hypothetical protein (RefSeq), at 518,656 to 519,195 _0461 Shew_0462: Shew_0462 - hypothetical protein (RefSeq), at 519,508 to 519,813 _0462 Shew_0463: Shew_0463 - hypothetical protein (RefSeq), at 519,932 to 520,315 _0463 Position (kb) 518 519 520Strain fitness (log2 ratio) -2 -1 0 1at 517.935 kb on - strand, within Shew_0460at 518.174 kb on + strand, within Shew_0460at 518.339 kb on - strand, within Shew_0460at 518.791 kb on - strand, within Shew_0461at 518.833 kb on + strand, within Shew_0461at 519.049 kb on + strand, within Shew_0461at 519.157 kb on - strandat 519.454 kb on + strandat 519.640 kb on - strand, within Shew_0462at 520.076 kb on + strand, within Shew_0463at 520.084 kb on - strand, within Shew_0463at 520.113 kb on + strand, within Shew_0463

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml
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517,935 - Shew_0460 0.73 +1.2
518,174 + Shew_0460 0.83 -0.3
518,339 - Shew_0460 0.90 -0.0
518,791 - Shew_0461 0.25 +0.6
518,833 + Shew_0461 0.33 +0.8
519,049 + Shew_0461 0.73 +0.7
519,157 - -1.8
519,454 + -0.4
519,640 - Shew_0462 0.43 -1.5
520,076 + Shew_0463 0.38 +0.4
520,084 - Shew_0463 0.40 +0.3
520,113 + Shew_0463 0.47 +0.8

Or see this region's nucleotide sequence