Experiment: Carbenicillin 50 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0253 and Shew_0254 are separated by 19 nucleotides Shew_0254 and Shew_0255 are separated by 131 nucleotides Shew_0255 and Shew_0256 are separated by 528 nucleotides
Shew_0253: Shew_0253 - secretion protein HlyD family protein (RefSeq), at 271,884 to 272,990
_0253
Shew_0254: Shew_0254 - hypothetical protein (RefSeq), at 273,010 to 273,519
_0254
Shew_0255: Shew_0255 - ion transport 2 domain-containing protein (RefSeq), at 273,651 to 274,331
_0255
Shew_0256: Shew_0256 - hypothetical protein (RefSeq), at 274,860 to 275,438
_0256
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 272.669 kb on - strand, within Shew_0253 at 272.757 kb on - strand, within Shew_0253 at 272.801 kb on + strand, within Shew_0253 at 272.801 kb on + strand, within Shew_0253 at 272.809 kb on - strand, within Shew_0253 at 272.809 kb on - strand, within Shew_0253 at 272.886 kb on - strand at 272.952 kb on + strand at 272.957 kb on + strand at 272.962 kb on + strand at 272.962 kb on + strand at 272.962 kb on + strand at 272.965 kb on - strand at 272.967 kb on + strand at 272.967 kb on + strand at 272.970 kb on - strand at 272.972 kb on + strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 273.133 kb on + strand, within Shew_0254 at 273.153 kb on + strand, within Shew_0254 at 273.163 kb on + strand, within Shew_0254 at 273.163 kb on + strand, within Shew_0254 at 273.166 kb on - strand, within Shew_0254 at 273.166 kb on - strand, within Shew_0254 at 273.171 kb on - strand, within Shew_0254 at 273.171 kb on - strand, within Shew_0254 at 273.190 kb on + strand, within Shew_0254 at 273.227 kb on + strand, within Shew_0254 at 273.249 kb on + strand, within Shew_0254 at 273.313 kb on - strand, within Shew_0254 at 273.372 kb on + strand, within Shew_0254 at 273.389 kb on + strand, within Shew_0254 at 273.398 kb on - strand, within Shew_0254 at 273.407 kb on - strand, within Shew_0254 at 273.412 kb on + strand, within Shew_0254 at 273.445 kb on + strand, within Shew_0254 at 273.446 kb on - strand, within Shew_0254 at 273.514 kb on + strand at 273.514 kb on + strand at 273.514 kb on - strand at 273.519 kb on + strand at 273.521 kb on - strand at 273.527 kb on + strand at 273.527 kb on - strand at 273.585 kb on - strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.606 kb on - strand at 273.606 kb on - strand at 273.606 kb on - strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.618 kb on - strand at 273.618 kb on - strand at 273.623 kb on - strand at 273.624 kb on + strand at 273.632 kb on + strand at 273.634 kb on + strand at 273.634 kb on + strand at 273.634 kb on + strand at 273.642 kb on - strand at 273.642 kb on - strand at 273.649 kb on - strand at 273.667 kb on - strand at 273.689 kb on + strand at 273.697 kb on - strand at 273.697 kb on - strand at 273.697 kb on - strand at 273.722 kb on - strand, within Shew_0255 at 273.722 kb on - strand, within Shew_0255 at 273.722 kb on - strand, within Shew_0255 at 273.746 kb on + strand, within Shew_0255 at 273.749 kb on - strand, within Shew_0255 at 273.756 kb on + strand, within Shew_0255 at 273.769 kb on - strand, within Shew_0255 at 273.801 kb on - strand, within Shew_0255 at 273.825 kb on - strand, within Shew_0255 at 273.872 kb on - strand, within Shew_0255 at 273.873 kb on - strand, within Shew_0255 at 273.873 kb on - strand, within Shew_0255 at 273.875 kb on + strand, within Shew_0255 at 273.921 kb on + strand, within Shew_0255 at 273.931 kb on + strand, within Shew_0255 at 273.940 kb on - strand, within Shew_0255 at 273.970 kb on - strand, within Shew_0255 at 274.036 kb on + strand, within Shew_0255 at 274.041 kb on + strand, within Shew_0255 at 274.049 kb on - strand, within Shew_0255 at 274.059 kb on + strand, within Shew_0255 at 274.059 kb on + strand, within Shew_0255 at 274.059 kb on + strand, within Shew_0255 at 274.063 kb on - strand, within Shew_0255 at 274.076 kb on + strand, within Shew_0255 at 274.076 kb on + strand, within Shew_0255 at 274.084 kb on - strand, within Shew_0255 at 274.084 kb on - strand, within Shew_0255 at 274.084 kb on - strand, within Shew_0255 at 274.095 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.096 kb on + strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.104 kb on - strand, within Shew_0255 at 274.113 kb on + strand, within Shew_0255 at 274.120 kb on + strand, within Shew_0255 at 274.179 kb on + strand, within Shew_0255 at 274.179 kb on + strand, within Shew_0255 at 274.179 kb on + strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.187 kb on - strand, within Shew_0255 at 274.188 kb on + strand, within Shew_0255 at 274.194 kb on + strand, within Shew_0255 at 274.195 kb on + strand, within Shew_0255 at 274.195 kb on + strand, within Shew_0255 at 274.195 kb on + strand, within Shew_0255 at 274.195 kb on + strand, within Shew_0255 at 274.201 kb on - strand, within Shew_0255 at 274.203 kb on - strand, within Shew_0255 at 274.203 kb on - strand, within Shew_0255 at 274.203 kb on - strand, within Shew_0255 at 274.205 kb on + strand, within Shew_0255 at 274.205 kb on + strand, within Shew_0255 at 274.213 kb on - strand, within Shew_0255 at 274.216 kb on - strand, within Shew_0255 at 274.219 kb on + strand, within Shew_0255 at 274.243 kb on + strand, within Shew_0255 at 274.246 kb on - strand, within Shew_0255 at 274.251 kb on - strand, within Shew_0255 at 274.284 kb on - strand at 274.284 kb on - strand at 274.298 kb on - strand at 274.300 kb on + strand at 274.397 kb on + strand at 274.400 kb on + strand at 274.418 kb on - strand at 274.418 kb on - strand at 274.434 kb on + strand at 274.434 kb on + strand at 274.434 kb on + strand at 274.442 kb on - strand at 274.442 kb on - strand at 274.593 kb on + strand at 274.608 kb on - strand at 274.629 kb on - strand at 274.650 kb on - strand at 274.650 kb on - strand at 274.655 kb on + strand at 274.745 kb on - strand at 274.746 kb on + strand at 275.142 kb on - strand, within Shew_0256 at 275.142 kb on - strand, within Shew_0256
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml remove 272,669 - Shew_0253 0.71 +0.5 272,757 - Shew_0253 0.79 -1.3 272,801 + Shew_0253 0.83 -0.1 272,801 + Shew_0253 0.83 +0.4 272,809 - Shew_0253 0.84 +0.6 272,809 - Shew_0253 0.84 +0.6 272,886 - +0.3 272,952 + -0.0 272,957 + -1.2 272,962 + -0.0 272,962 + +0.5 272,962 + -0.4 272,965 - +0.7 272,967 + +0.2 272,967 + -0.2 272,970 - -0.1 272,972 + -3.2 272,975 - +2.4 272,975 - -0.4 272,975 - -0.7 272,975 - +0.3 272,975 - +0.2 272,975 - -0.3 272,975 - +0.1 273,133 + Shew_0254 0.24 +0.7 273,153 + Shew_0254 0.28 +0.4 273,163 + Shew_0254 0.30 -0.4 273,163 + Shew_0254 0.30 +0.3 273,166 - Shew_0254 0.31 -0.3 273,166 - Shew_0254 0.31 +0.9 273,171 - Shew_0254 0.32 -0.4 273,171 - Shew_0254 0.32 -1.2 273,190 + Shew_0254 0.35 +0.5 273,227 + Shew_0254 0.43 +0.0 273,249 + Shew_0254 0.47 +0.1 273,313 - Shew_0254 0.59 -0.6 273,372 + Shew_0254 0.71 +0.4 273,389 + Shew_0254 0.74 -0.6 273,398 - Shew_0254 0.76 +0.3 273,407 - Shew_0254 0.78 -0.1 273,412 + Shew_0254 0.79 -0.1 273,445 + Shew_0254 0.85 -0.3 273,446 - Shew_0254 0.85 +0.1 273,514 + +0.5 273,514 + -1.2 273,514 - +0.2 273,519 + +0.4 273,521 - +0.1 273,527 + +0.1 273,527 - -0.4 273,585 - +0.0 273,598 + -1.2 273,598 + +1.1 273,598 + +0.7 273,598 + -0.5 273,598 + +0.2 273,606 - +0.3 273,606 - +0.2 273,606 - +0.2 273,608 + +0.1 273,608 + -1.2 273,608 + +0.1 273,608 + +0.3 273,608 + +0.1 273,608 + -2.2 273,608 + +0.8 273,608 + -0.2 273,608 + +0.7 273,608 + -0.3 273,608 + -0.1 273,608 + +0.5 273,608 + -0.4 273,608 + -0.7 273,608 + -0.2 273,608 + +0.1 273,608 + +0.1 273,608 + +0.2 273,608 + +0.4 273,616 - +0.2 273,616 - +0.3 273,616 - -1.1 273,616 - +1.0 273,616 - +0.3 273,616 - -0.2 273,616 - -0.5 273,616 - +0.5 273,616 - -0.0 273,616 - -0.6 273,616 - -0.6 273,616 - +0.3 273,616 - +0.3 273,616 - +0.6 273,616 - -0.1 273,616 - +0.4 273,616 - +0.9 273,616 - +0.5 273,616 - +0.3 273,616 - -0.3 273,616 - +0.8 273,616 - -0.9 273,616 - -0.7 273,618 - +0.1 273,618 - -0.2 273,623 - +0.1 273,624 + -0.1 273,632 + +0.7 273,634 + +0.5 273,634 + +0.8 273,634 + -0.1 273,642 - -0.3 273,642 - -2.2 273,649 - +0.1 273,667 - +0.1 273,689 + +0.2 273,697 - +0.3 273,697 - -0.7 273,697 - +0.3 273,722 - Shew_0255 0.10 +0.1 273,722 - Shew_0255 0.10 +0.7 273,722 - Shew_0255 0.10 +0.2 273,746 + Shew_0255 0.14 +0.3 273,749 - Shew_0255 0.14 +0.8 273,756 + Shew_0255 0.15 -0.6 273,769 - Shew_0255 0.17 -0.1 273,801 - Shew_0255 0.22 +0.1 273,825 - Shew_0255 0.26 +0.1 273,872 - Shew_0255 0.32 -0.0 273,873 - Shew_0255 0.33 -0.0 273,873 - Shew_0255 0.33 +1.5 273,875 + Shew_0255 0.33 +0.3 273,921 + Shew_0255 0.40 -0.1 273,931 + Shew_0255 0.41 +1.6 273,940 - Shew_0255 0.42 +0.2 273,970 - Shew_0255 0.47 -0.3 274,036 + Shew_0255 0.57 -0.0 274,041 + Shew_0255 0.57 +0.5 274,049 - Shew_0255 0.58 +1.6 274,059 + Shew_0255 0.60 +0.6 274,059 + Shew_0255 0.60 +0.2 274,059 + Shew_0255 0.60 -0.3 274,063 - Shew_0255 0.60 +0.4 274,076 + Shew_0255 0.62 +0.0 274,076 + Shew_0255 0.62 +0.8 274,084 - Shew_0255 0.64 +0.1 274,084 - Shew_0255 0.64 -0.7 274,084 - Shew_0255 0.64 +1.4 274,095 + Shew_0255 0.65 -0.8 274,096 + Shew_0255 0.65 +0.8 274,096 + Shew_0255 0.65 +0.1 274,096 + Shew_0255 0.65 +0.1 274,096 + Shew_0255 0.65 +0.6 274,096 + Shew_0255 0.65 -0.1 274,096 + Shew_0255 0.65 +0.9 274,104 - Shew_0255 0.67 +1.4 274,104 - Shew_0255 0.67 -0.1 274,104 - Shew_0255 0.67 +1.5 274,104 - Shew_0255 0.67 +1.7 274,104 - Shew_0255 0.67 -0.4 274,104 - Shew_0255 0.67 +0.4 274,113 + Shew_0255 0.68 -0.0 274,120 + Shew_0255 0.69 +0.0 274,179 + Shew_0255 0.78 +0.7 274,179 + Shew_0255 0.78 +0.4 274,179 + Shew_0255 0.78 +0.2 274,187 - Shew_0255 0.79 -0.4 274,187 - Shew_0255 0.79 +0.1 274,187 - Shew_0255 0.79 -1.9 274,187 - Shew_0255 0.79 -0.8 274,187 - Shew_0255 0.79 +0.5 274,187 - Shew_0255 0.79 -0.2 274,188 + Shew_0255 0.79 -0.2 274,194 + Shew_0255 0.80 +0.1 274,195 + Shew_0255 0.80 +0.5 274,195 + Shew_0255 0.80 -0.3 274,195 + Shew_0255 0.80 +0.1 274,195 + Shew_0255 0.80 +0.1 274,201 - Shew_0255 0.81 -0.4 274,203 - Shew_0255 0.81 -1.2 274,203 - Shew_0255 0.81 +0.4 274,203 - Shew_0255 0.81 -0.0 274,205 + Shew_0255 0.81 +1.1 274,205 + Shew_0255 0.81 +0.2 274,213 - Shew_0255 0.83 +0.3 274,216 - Shew_0255 0.83 -1.3 274,219 + Shew_0255 0.83 -0.2 274,243 + Shew_0255 0.87 +0.5 274,246 - Shew_0255 0.87 +0.6 274,251 - Shew_0255 0.88 +0.3 274,284 - -0.0 274,284 - -0.8 274,298 - +1.0 274,300 + +0.6 274,397 + +0.0 274,400 + +0.3 274,418 - +1.4 274,418 - +0.6 274,434 + +0.5 274,434 + -0.6 274,434 + -1.1 274,442 - -1.0 274,442 - +0.4 274,593 + -0.0 274,608 - +0.3 274,629 - -0.0 274,650 - +0.3 274,650 - -0.6 274,655 + +1.4 274,745 - -0.2 274,746 + -0.2 275,142 - Shew_0256 0.49 -0.5 275,142 - Shew_0256 0.49 +0.1
Or see this region's nucleotide sequence