Experiment: Carbenicillin 50 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0074 and Shew_0075 overlap by 4 nucleotides Shew_0075 and Shew_0076 are separated by 292 nucleotides Shew_0076 and Shew_0077 are separated by 21 nucleotides Shew_0077 and Shew_0078 are separated by 136 nucleotides
Shew_0074: Shew_0074 - no description, at 88,262 to 88,885
_0074
Shew_0075: Shew_0075 - hypothetical protein (RefSeq), at 88,882 to 89,097
_0075
Shew_0076: Shew_0076 - antibiotic biosynthesis monooxygenase (RefSeq), at 89,390 to 89,677
_0076
Shew_0077: Shew_0077 - GCN5-related N-acetyltransferase (RefSeq), at 89,699 to 90,652
_0077
Shew_0078: Shew_0078 - ribokinase-like domain-containing protein (RefSeq), at 90,789 to 91,649
_0078
Position (kb) 89
90
91 Strain fitness (log2 ratio) -1
0
1
2 at 88.755 kb on + strand, within Shew_0074 at 88.847 kb on + strand at 89.081 kb on - strand at 89.113 kb on - strand at 89.291 kb on + strand at 89.299 kb on - strand at 89.531 kb on + strand, within Shew_0076 at 89.567 kb on + strand, within Shew_0076 at 89.572 kb on + strand, within Shew_0076 at 89.671 kb on + strand at 89.671 kb on + strand at 89.671 kb on + strand at 89.840 kb on - strand, within Shew_0077 at 89.909 kb on + strand, within Shew_0077 at 89.975 kb on + strand, within Shew_0077 at 90.001 kb on + strand, within Shew_0077 at 90.009 kb on - strand, within Shew_0077 at 90.107 kb on + strand, within Shew_0077 at 90.107 kb on + strand, within Shew_0077 at 90.115 kb on - strand, within Shew_0077 at 90.115 kb on - strand, within Shew_0077 at 90.198 kb on + strand, within Shew_0077 at 90.441 kb on + strand, within Shew_0077 at 90.496 kb on - strand, within Shew_0077 at 90.500 kb on + strand, within Shew_0077 at 90.707 kb on - strand at 90.789 kb on - strand at 90.849 kb on + strand at 90.921 kb on + strand, within Shew_0078 at 90.927 kb on + strand, within Shew_0078 at 90.932 kb on + strand, within Shew_0078 at 90.940 kb on - strand, within Shew_0078 at 90.940 kb on - strand, within Shew_0078 at 90.944 kb on + strand, within Shew_0078 at 90.962 kb on - strand, within Shew_0078 at 91.033 kb on + strand, within Shew_0078 at 91.216 kb on - strand, within Shew_0078 at 91.226 kb on - strand, within Shew_0078 at 91.461 kb on - strand, within Shew_0078 at 91.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 50 mg/ml remove 88,755 + Shew_0074 0.79 +0.3 88,847 + +0.2 89,081 - -0.1 89,113 - +0.8 89,291 + -0.2 89,299 - +0.0 89,531 + Shew_0076 0.49 +0.2 89,567 + Shew_0076 0.61 -0.2 89,572 + Shew_0076 0.63 +0.1 89,671 + -1.4 89,671 + +0.0 89,671 + -0.7 89,840 - Shew_0077 0.15 -0.2 89,909 + Shew_0077 0.22 -0.5 89,975 + Shew_0077 0.29 +0.5 90,001 + Shew_0077 0.32 +0.1 90,009 - Shew_0077 0.32 -0.0 90,107 + Shew_0077 0.43 -0.1 90,107 + Shew_0077 0.43 +0.0 90,115 - Shew_0077 0.44 -1.7 90,115 - Shew_0077 0.44 -0.3 90,198 + Shew_0077 0.52 -0.1 90,441 + Shew_0077 0.78 -0.6 90,496 - Shew_0077 0.84 -0.3 90,500 + Shew_0077 0.84 -0.5 90,707 - +0.6 90,789 - -1.1 90,849 + -0.3 90,921 + Shew_0078 0.15 +0.2 90,927 + Shew_0078 0.16 -0.3 90,932 + Shew_0078 0.17 +0.3 90,940 - Shew_0078 0.18 -0.5 90,940 - Shew_0078 0.18 +0.3 90,944 + Shew_0078 0.18 +0.1 90,962 - Shew_0078 0.20 +2.3 91,033 + Shew_0078 0.28 +0.2 91,216 - Shew_0078 0.50 +0.2 91,226 - Shew_0078 0.51 +0.3 91,461 - Shew_0078 0.78 -0.1 91,572 - -0.0
Or see this region's nucleotide sequence