Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3634

Experiment: BHIS with Fusidic 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3633 and BT3634 are separated by 846 nucleotidesBT3634 and BT3635 are separated by 32 nucleotidesBT3635 and BT3636 are separated by 212 nucleotides BT3633: BT3633 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 4,706,191 to 4,709,028 BT3633 BT3634: BT3634 - transposase (NCBI ptt file), at 4,709,875 to 4,710,768 BT3634 BT3635: BT3635 - hypothetical protein (NCBI ptt file), at 4,710,801 to 4,711,148 BT3635 BT3636: BT3636 - aspartate-semialdehyde dehydrogenase (NCBI ptt file), at 4,711,361 to 4,712,368 BT3636 Position (kb) 4709 4710 4711Strain fitness (log2 ratio) -2 -1 0 1 2at 4708.929 kb on + strandat 4708.956 kb on + strandat 4708.956 kb on + strandat 4708.957 kb on - strandat 4709.006 kb on - strandat 4709.010 kb on + strandat 4709.017 kb on - strandat 4709.071 kb on - strandat 4709.109 kb on - strandat 4709.115 kb on - strandat 4709.121 kb on + strandat 4709.271 kb on + strandat 4709.272 kb on - strandat 4709.313 kb on + strandat 4709.355 kb on - strandat 4709.357 kb on + strandat 4709.380 kb on - strandat 4709.401 kb on + strandat 4709.404 kb on - strandat 4709.411 kb on + strandat 4709.444 kb on - strandat 4709.444 kb on - strandat 4709.444 kb on - strandat 4709.645 kb on - strandat 4709.654 kb on - strandat 4711.188 kb on + strandat 4711.188 kb on + strandat 4711.244 kb on + strandat 4711.340 kb on - strandat 4711.350 kb on - strandat 4711.353 kb on + strandat 4711.358 kb on - strandat 4711.358 kb on - strandat 4711.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Fusidic 0.002 mg/ml
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4,708,929 + +0.3
4,708,956 + -0.3
4,708,956 + +0.4
4,708,957 - -0.4
4,709,006 - -0.4
4,709,010 + -1.9
4,709,017 - -0.0
4,709,071 - -2.2
4,709,109 - -0.9
4,709,115 - -1.2
4,709,121 + +0.3
4,709,271 + -2.2
4,709,272 - +1.0
4,709,313 + -1.0
4,709,355 - -1.1
4,709,357 + +0.4
4,709,380 - +1.2
4,709,401 + -1.4
4,709,404 - -2.5
4,709,411 + -1.5
4,709,444 - +1.6
4,709,444 - +0.1
4,709,444 - -0.7
4,709,645 - -2.1
4,709,654 - +1.9
4,711,188 + -1.6
4,711,188 + -0.5
4,711,244 + -2.2
4,711,340 - -0.4
4,711,350 - -1.8
4,711,353 + -1.7
4,711,358 - -2.2
4,711,358 - -1.6
4,711,362 + -0.1

Or see this region's nucleotide sequence