Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24935

Experiment: Urea (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Urea (N)
5,580,106	-		PFLU_RS24925	0.36	-0.2
5,580,250	+		PFLU_RS24925	0.57	-1.1
5,580,251	-		PFLU_RS24925	0.57	+1.7
5,580,410	+		PFLU_RS24925	0.81	+0.5
5,580,411	-		PFLU_RS24925	0.81	-1.6
5,580,538	-				-1.7
5,580,587	+				+1.4
5,580,587	+				+1.1
5,580,587	+				+0.4
5,580,587	+				+0.8
5,580,588	-				+0.7
5,580,641	+				+1.0
5,580,641	+				+1.1
5,580,642	-				+1.0
5,580,676	+		PFLU_RS24930	0.24	-0.3
5,580,676	+		PFLU_RS24930	0.24	+2.7
5,580,677	-		PFLU_RS24930	0.24	+0.1
5,580,758	+		PFLU_RS24930	0.69	-0.0
5,580,759	-		PFLU_RS24930	0.70	+0.7
5,580,759	-		PFLU_RS24930	0.70	-1.6
5,580,759	-		PFLU_RS24930	0.70	+1.0
5,580,829	+				+0.1
5,580,829	+				-0.3
5,580,829	+				+0.7
5,580,849	-				+0.4
5,580,875	+				+0.3
5,580,891	+				-0.3
5,580,891	+				+0.5
5,580,892	-				+0.7
5,580,914	-				-1.9
5,580,914	-				+1.2
5,580,951	-				+0.1
5,580,958	-				+0.9
5,580,964	+				+0.0
5,580,964	+				+0.1
5,580,965	-				+0.5
5,580,996	-				+0.5
5,581,002	-				-0.1
5,581,027	-				+0.1
5,581,028	+				+0.6
5,581,194	-		PFLU_RS24935	0.17	+1.0
5,581,194	-		PFLU_RS24935	0.17	-0.3
5,581,195	+		PFLU_RS24935	0.17	-0.3
5,581,195	+		PFLU_RS24935	0.17	+2.0
5,581,196	-		PFLU_RS24935	0.18	+2.0
5,581,196	-		PFLU_RS24935	0.18	-0.1
5,581,205	+		PFLU_RS24935	0.19	+2.0
5,581,243	-		PFLU_RS24935	0.23	-1.9
5,581,309	+		PFLU_RS24935	0.32	+0.1
5,581,309	+		PFLU_RS24935	0.32	+0.2
5,581,310	-		PFLU_RS24935	0.32	+1.7
5,581,310	-		PFLU_RS24935	0.32	-0.9
5,581,340	+		PFLU_RS24935	0.36	+0.3
5,581,340	+		PFLU_RS24935	0.36	+1.7
5,581,340	+		PFLU_RS24935	0.36	+0.6
5,581,340	+		PFLU_RS24935	0.36	+1.5
5,581,341	-		PFLU_RS24935	0.36	-1.0
5,581,341	-		PFLU_RS24935	0.36	-0.9
5,581,341	-		PFLU_RS24935	0.36	+0.9
5,581,346	+		PFLU_RS24935	0.36	-0.2
5,581,400	-		PFLU_RS24935	0.43	-0.4
5,581,415	-		PFLU_RS24935	0.45	+1.0
5,581,476	-		PFLU_RS24935	0.53	+1.1
5,581,494	+		PFLU_RS24935	0.55	-0.7
5,581,537	-		PFLU_RS24935	0.61	-1.5
5,581,537	-		PFLU_RS24935	0.61	+0.5
5,581,547	+		PFLU_RS24935	0.62	+1.1
5,581,553	+		PFLU_RS24935	0.63	+0.9
5,581,671	-		PFLU_RS24935	0.78	-0.3
5,581,771	+				+0.1
5,581,774	-				-0.5
5,581,787	-				-1.0
5,581,789	-				-0.2
5,581,868	+				-0.3
5,581,933	+				+0.2
5,581,933	+				+0.3
5,581,933	+				+1.0
5,581,933	+				+0.4
5,581,933	+				-2.5
5,581,933	+				+0.8
5,581,934	-				+1.3
5,581,934	-				+0.7
5,581,934	-				-0.6
5,581,934	-				+1.7
5,581,934	-				-1.4
5,581,934	-				+0.2
5,581,934	-				+0.8
5,581,934	-				+1.7
5,581,934	-				+2.7
5,581,934	-				+0.2
5,581,974	+				+0.5
5,581,998	+				-0.5
5,581,998	+				-1.4
5,581,998	+				-0.6
5,581,998	+				+1.2
5,581,998	+				+1.4
5,581,998	+				-0.8
5,581,998	+				-1.0
5,581,998	+				-1.1
5,581,998	+				-0.0
5,581,998	+				+0.3
5,581,998	+				+1.0
5,581,998	+				-0.3
5,581,999	-				+1.2
5,581,999	-				+3.7
5,581,999	-				-0.9
5,581,999	-				-0.3
5,581,999	-				-0.2
5,581,999	-				+0.4
5,581,999	-				+0.6
5,581,999	-				+0.0
5,581,999	-				+2.1
5,581,999	-				+0.4
5,582,018	+				+0.3
5,582,018	+				-2.5
5,582,018	+				-0.4
5,582,018	+				+2.3
5,582,018	+				-2.3
5,582,018	+				+2.9
5,582,019	-				+2.0
5,582,019	-				+3.0
5,582,021	+				-2.2
5,582,021	+				+0.1
5,582,021	+				+1.1
5,582,021	+				+0.8
5,582,021	+				+0.0
5,582,021	+				+1.4
5,582,022	-				+3.7
5,582,022	-				-0.6
5,582,022	-				-1.0
5,582,022	-				-0.2
5,582,022	-				-0.3
5,582,022	-				-0.1
5,582,047	+				-0.3
5,582,047	+				+1.2
5,582,047	+				-1.3
5,582,047	+				+1.0
5,582,047	+				+0.2
5,582,047	+				+1.1
5,582,047	+				+0.3
5,582,048	-				-0.9
5,582,048	-				-1.1
5,582,048	-				-0.4
5,582,048	-				-0.5
5,582,083	-				+0.2
5,582,128	+				+0.2
5,582,128	+				-1.7
5,582,128	+				+0.3
5,582,128	+				+0.1
5,582,230	+				+1.0
5,582,230	+				-0.8
5,582,231	-				+0.5
5,582,231	-				-0.3
5,582,231	-				-0.2
5,582,231	-				-1.4
5,582,231	-				-0.4
5,582,231	-				-0.0
5,582,239	+				-0.3
5,582,239	+				+2.6
5,582,239	+				-0.9
5,582,240	-				+0.1
5,582,240	-				+0.9
5,582,266	+				+0.3
5,582,266	+				-1.5
5,582,266	+				+1.7
5,582,266	+				+0.1
5,582,266	+				-1.0
5,582,266	+				+1.3
5,582,267	-				-0.3
5,582,267	-				-1.0
5,582,267	-				+1.6
5,582,267	-				+0.4
5,582,271	+				-0.9
5,582,272	-				-0.3
5,582,272	-				-2.0
5,582,284	-				-1.5
5,582,284	-				+0.1
5,582,284	-				-1.1
5,582,290	+				-1.9
5,582,290	+				+0.7
5,582,339	-				+1.6
5,582,339	-				+0.1
5,582,360	+				+0.8
5,582,360	+				+0.5
5,582,423	+				+0.7
5,582,423	+				-0.0
5,582,423	+				+0.9
5,582,423	+				+0.5
5,582,423	+				-0.6
5,582,423	+				+0.2
5,582,424	-				-1.3
5,582,424	-				+1.0
5,582,442	-				-1.3
5,582,443	+				+1.9
5,582,443	+				+1.1
5,582,443	+				+1.2
5,582,443	+				-0.5
5,582,444	-				+0.7
5,582,444	-				+0.3
5,582,444	-				-0.6
5,582,466	+				-0.9
5,582,466	+				+1.2
5,582,466	+				-0.3
5,582,466	+				+0.9
5,582,467	-				-1.3
5,582,467	-				-2.7
5,582,467	-				-0.2
5,582,467	-				-0.1
5,582,467	-				+0.2
5,582,467	-				-0.3
5,582,467	-				+0.6
5,582,489	+				+0.1
5,582,510	+				+0.5
5,582,510	+				+0.8
5,582,510	+				+3.0
5,582,510	+				+0.1
5,582,511	-				+0.8
5,582,537	-				-0.3
5,582,556	+				-1.3
5,582,556	+				-0.5
5,582,557	-				+0.0
5,582,557	-				-1.6
5,582,580	+				-2.2
5,582,699	+		PFLU_RS24940	0.15	+0.3
5,582,811	-		PFLU_RS24940	0.22	+1.0
5,582,843	+		PFLU_RS24940	0.24	+1.6