Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4100

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4099 and Ga0059261_4100 are separated by 168 nucleotidesGa0059261_4100 and Ga0059261_4101 overlap by 16 nucleotides Ga0059261_4099: Ga0059261_4099 - hypothetical protein, at 4,237,201 to 4,238,049 _4099 Ga0059261_4100: Ga0059261_4100 - Dolichyl-phosphate-mannose-protein mannosyltransferase, at 4,238,218 to 4,239,828 _4100 Ga0059261_4101: Ga0059261_4101 - Glycosyltransferases involved in cell wall biogenesis, at 4,239,813 to 4,240,835 _4101 Position (kb) 4238 4239 4240Strain fitness (log2 ratio) -2 -1 0 1 2at 4237.367 kb on + strand, within Ga0059261_4099at 4237.368 kb on - strand, within Ga0059261_4099at 4237.368 kb on - strand, within Ga0059261_4099at 4237.368 kb on - strand, within Ga0059261_4099at 4237.368 kb on - strand, within Ga0059261_4099at 4237.415 kb on + strand, within Ga0059261_4099at 4237.415 kb on + strand, within Ga0059261_4099at 4237.416 kb on - strand, within Ga0059261_4099at 4237.485 kb on + strand, within Ga0059261_4099at 4237.485 kb on + strand, within Ga0059261_4099at 4237.485 kb on + strandat 4237.485 kb on + strand, within Ga0059261_4099at 4237.485 kb on + strand, within Ga0059261_4099at 4237.486 kb on - strand, within Ga0059261_4099at 4237.486 kb on - strand, within Ga0059261_4099at 4237.486 kb on - strand, within Ga0059261_4099at 4237.678 kb on + strand, within Ga0059261_4099at 4237.678 kb on + strand, within Ga0059261_4099at 4237.679 kb on - strand, within Ga0059261_4099at 4237.688 kb on + strand, within Ga0059261_4099at 4237.688 kb on + strand, within Ga0059261_4099at 4237.688 kb on + strand, within Ga0059261_4099at 4237.689 kb on - strand, within Ga0059261_4099at 4237.689 kb on - strand, within Ga0059261_4099at 4237.689 kb on - strand, within Ga0059261_4099at 4237.689 kb on - strand, within Ga0059261_4099at 4237.689 kb on - strand, within Ga0059261_4099at 4237.881 kb on + strand, within Ga0059261_4099at 4237.881 kb on + strand, within Ga0059261_4099at 4237.881 kb on + strandat 4237.881 kb on + strand, within Ga0059261_4099at 4237.881 kb on + strand, within Ga0059261_4099at 4237.881 kb on + strand, within Ga0059261_4099at 4237.881 kb on + strand, within Ga0059261_4099at 4237.882 kb on - strand, within Ga0059261_4099at 4237.882 kb on - strand, within Ga0059261_4099at 4237.882 kb on - strand, within Ga0059261_4099at 4237.882 kb on - strand, within Ga0059261_4099at 4238.106 kb on + strandat 4238.106 kb on + strandat 4238.107 kb on - strandat 4238.107 kb on - strandat 4238.125 kb on - strandat 4238.145 kb on + strandat 4238.146 kb on - strandat 4238.356 kb on + strandat 4238.356 kb on + strandat 4238.356 kb on + strandat 4238.357 kb on - strandat 4238.357 kb on - strandat 4238.383 kb on + strand, within Ga0059261_4100at 4238.384 kb on - strand, within Ga0059261_4100at 4238.384 kb on - strand, within Ga0059261_4100at 4238.384 kb on - strandat 4238.503 kb on + strand, within Ga0059261_4100at 4238.503 kb on + strand, within Ga0059261_4100at 4238.503 kb on + strand, within Ga0059261_4100at 4238.503 kb on + strand, within Ga0059261_4100at 4238.504 kb on - strand, within Ga0059261_4100at 4238.504 kb on - strand, within Ga0059261_4100at 4238.581 kb on + strand, within Ga0059261_4100at 4238.581 kb on + strand, within Ga0059261_4100at 4238.581 kb on + strand, within Ga0059261_4100at 4238.582 kb on - strand, within Ga0059261_4100at 4238.687 kb on + strand, within Ga0059261_4100at 4238.688 kb on - strand, within Ga0059261_4100at 4238.711 kb on - strandat 4238.711 kb on - strand, within Ga0059261_4100at 4238.809 kb on + strand, within Ga0059261_4100at 4238.809 kb on + strand, within Ga0059261_4100at 4238.809 kb on + strand, within Ga0059261_4100at 4238.809 kb on + strand, within Ga0059261_4100at 4238.810 kb on - strand, within Ga0059261_4100at 4238.810 kb on - strand, within Ga0059261_4100at 4238.810 kb on - strand, within Ga0059261_4100at 4238.810 kb on - strand, within Ga0059261_4100at 4238.852 kb on + strand, within Ga0059261_4100at 4238.944 kb on + strand, within Ga0059261_4100at 4238.945 kb on - strand, within Ga0059261_4100at 4238.945 kb on - strand, within Ga0059261_4100at 4238.945 kb on - strand, within Ga0059261_4100at 4238.945 kb on - strand, within Ga0059261_4100at 4239.013 kb on + strand, within Ga0059261_4100at 4239.013 kb on + strand, within Ga0059261_4100at 4239.259 kb on + strand, within Ga0059261_4100at 4239.260 kb on - strand, within Ga0059261_4100at 4239.559 kb on + strand, within Ga0059261_4100at 4239.560 kb on - strand, within Ga0059261_4100at 4239.631 kb on + strand, within Ga0059261_4100at 4239.631 kb on + strand, within Ga0059261_4100at 4239.631 kb on + strand, within Ga0059261_4100at 4239.637 kb on + strand, within Ga0059261_4100at 4239.637 kb on + strand, within Ga0059261_4100at 4239.637 kb on + strand, within Ga0059261_4100at 4239.638 kb on - strand, within Ga0059261_4100at 4239.638 kb on - strand, within Ga0059261_4100at 4239.706 kb on - strandat 4239.814 kb on + strandat 4239.814 kb on + strandat 4239.814 kb on + strandat 4239.815 kb on - strandat 4239.973 kb on + strand, within Ga0059261_4101at 4239.974 kb on - strand, within Ga0059261_4101at 4240.090 kb on + strand, within Ga0059261_4101at 4240.090 kb on + strand, within Ga0059261_4101at 4240.090 kb on + strandat 4240.090 kb on + strand, within Ga0059261_4101at 4240.090 kb on + strand, within Ga0059261_4101at 4240.090 kb on + strand, within Ga0059261_4101at 4240.091 kb on - strand, within Ga0059261_4101at 4240.091 kb on - strand, within Ga0059261_4101at 4240.091 kb on - strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.094 kb on + strand, within Ga0059261_4101at 4240.095 kb on - strand, within Ga0059261_4101at 4240.095 kb on - strand, within Ga0059261_4101at 4240.095 kb on - strand, within Ga0059261_4101at 4240.095 kb on - strand, within Ga0059261_4101at 4240.095 kb on - strand, within Ga0059261_4101at 4240.095 kb on - strand, within Ga0059261_4101at 4240.095 kb on - strand, within Ga0059261_4101at 4240.252 kb on + strand, within Ga0059261_4101at 4240.253 kb on - strand, within Ga0059261_4101at 4240.253 kb on - strand, within Ga0059261_4101at 4240.253 kb on - strand, within Ga0059261_4101at 4240.253 kb on - strand, within Ga0059261_4101at 4240.299 kb on + strand, within Ga0059261_4101at 4240.299 kb on + strand, within Ga0059261_4101at 4240.299 kb on + strand, within Ga0059261_4101at 4240.299 kb on + strand, within Ga0059261_4101at 4240.299 kb on + strand, within Ga0059261_4101at 4240.299 kb on + strandat 4240.300 kb on - strand, within Ga0059261_4101at 4240.300 kb on - strand, within Ga0059261_4101at 4240.300 kb on - strand, within Ga0059261_4101at 4240.300 kb on - strand, within Ga0059261_4101at 4240.304 kb on - strand, within Ga0059261_4101at 4240.314 kb on - strand, within Ga0059261_4101at 4240.417 kb on + strand, within Ga0059261_4101at 4240.417 kb on + strand, within Ga0059261_4101at 4240.417 kb on + strand, within Ga0059261_4101at 4240.417 kb on + strand, within Ga0059261_4101at 4240.417 kb on + strand, within Ga0059261_4101at 4240.417 kb on + strand, within Ga0059261_4101at 4240.417 kb on + strand, within Ga0059261_4101at 4240.418 kb on - strand, within Ga0059261_4101at 4240.418 kb on - strand, within Ga0059261_4101at 4240.418 kb on - strand, within Ga0059261_4101at 4240.418 kb on - strand, within Ga0059261_4101at 4240.477 kb on + strand, within Ga0059261_4101at 4240.477 kb on + strand, within Ga0059261_4101at 4240.477 kb on + strand, within Ga0059261_4101at 4240.478 kb on - strand, within Ga0059261_4101at 4240.478 kb on - strand, within Ga0059261_4101at 4240.478 kb on - strand, within Ga0059261_4101at 4240.478 kb on - strand, within Ga0059261_4101at 4240.478 kb on - strand, within Ga0059261_4101at 4240.478 kb on - strand, within Ga0059261_4101at 4240.588 kb on + strand, within Ga0059261_4101at 4240.589 kb on - strand, within Ga0059261_4101at 4240.612 kb on + strand, within Ga0059261_4101at 4240.613 kb on - strand, within Ga0059261_4101at 4240.732 kb on + strand, within Ga0059261_4101at 4240.732 kb on + strand, within Ga0059261_4101at 4240.771 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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4,237,367 + Ga0059261_4099 0.20 +0.1
4,237,368 - Ga0059261_4099 0.20 +0.0
4,237,368 - Ga0059261_4099 0.20 -0.2
4,237,368 - Ga0059261_4099 0.20 -0.2
4,237,368 - Ga0059261_4099 0.20 -0.7
4,237,415 + Ga0059261_4099 0.25 +1.7
4,237,415 + Ga0059261_4099 0.25 -0.3
4,237,416 - Ga0059261_4099 0.25 -0.2
4,237,485 + Ga0059261_4099 0.33 -0.5
4,237,485 + Ga0059261_4099 0.33 +1.7
4,237,485 + -0.8
4,237,485 + Ga0059261_4099 0.33 -0.4
4,237,485 + Ga0059261_4099 0.33 +0.6
4,237,486 - Ga0059261_4099 0.34 -0.7
4,237,486 - Ga0059261_4099 0.34 -1.7
4,237,486 - Ga0059261_4099 0.34 -0.6
4,237,678 + Ga0059261_4099 0.56 +1.0
4,237,678 + Ga0059261_4099 0.56 +0.9
4,237,679 - Ga0059261_4099 0.56 +1.5
4,237,688 + Ga0059261_4099 0.57 +0.2
4,237,688 + Ga0059261_4099 0.57 +0.4
4,237,688 + Ga0059261_4099 0.57 -0.1
4,237,689 - Ga0059261_4099 0.57 -0.2
4,237,689 - Ga0059261_4099 0.57 +0.7
4,237,689 - Ga0059261_4099 0.57 -0.0
4,237,689 - Ga0059261_4099 0.57 +0.5
4,237,689 - Ga0059261_4099 0.57 -0.6
4,237,881 + Ga0059261_4099 0.80 -0.3
4,237,881 + Ga0059261_4099 0.80 -0.5
4,237,881 + -1.3
4,237,881 + Ga0059261_4099 0.80 +0.8
4,237,881 + Ga0059261_4099 0.80 -0.4
4,237,881 + Ga0059261_4099 0.80 +0.2
4,237,881 + Ga0059261_4099 0.80 -0.5
4,237,882 - Ga0059261_4099 0.80 +0.1
4,237,882 - Ga0059261_4099 0.80 -0.9
4,237,882 - Ga0059261_4099 0.80 +0.1
4,237,882 - Ga0059261_4099 0.80 +0.2
4,238,106 + +0.4
4,238,106 + -0.0
4,238,107 - +0.1
4,238,107 - +0.1
4,238,125 - +0.2
4,238,145 + +0.8
4,238,146 - +0.2
4,238,356 + +0.4
4,238,356 + -0.2
4,238,356 + +0.2
4,238,357 - +1.3
4,238,357 - +0.4
4,238,383 + Ga0059261_4100 0.10 -0.6
4,238,384 - Ga0059261_4100 0.10 -0.9
4,238,384 - Ga0059261_4100 0.10 +0.5
4,238,384 - -0.3
4,238,503 + Ga0059261_4100 0.18 +0.7
4,238,503 + Ga0059261_4100 0.18 +0.3
4,238,503 + Ga0059261_4100 0.18 +0.4
4,238,503 + Ga0059261_4100 0.18 -0.7
4,238,504 - Ga0059261_4100 0.18 -1.6
4,238,504 - Ga0059261_4100 0.18 +0.5
4,238,581 + Ga0059261_4100 0.23 +0.3
4,238,581 + Ga0059261_4100 0.23 +0.6
4,238,581 + Ga0059261_4100 0.23 +1.2
4,238,582 - Ga0059261_4100 0.23 +0.2
4,238,687 + Ga0059261_4100 0.29 +0.6
4,238,688 - Ga0059261_4100 0.29 +0.4
4,238,711 - -0.0
4,238,711 - Ga0059261_4100 0.31 +0.9
4,238,809 + Ga0059261_4100 0.37 +0.8
4,238,809 + Ga0059261_4100 0.37 -0.1
4,238,809 + Ga0059261_4100 0.37 +0.6
4,238,809 + Ga0059261_4100 0.37 +0.2
4,238,810 - Ga0059261_4100 0.37 +0.1
4,238,810 - Ga0059261_4100 0.37 -0.2
4,238,810 - Ga0059261_4100 0.37 +0.1
4,238,810 - Ga0059261_4100 0.37 -0.8
4,238,852 + Ga0059261_4100 0.39 +0.0
4,238,944 + Ga0059261_4100 0.45 +0.9
4,238,945 - Ga0059261_4100 0.45 +0.2
4,238,945 - Ga0059261_4100 0.45 -0.5
4,238,945 - Ga0059261_4100 0.45 +1.5
4,238,945 - Ga0059261_4100 0.45 -0.2
4,239,013 + Ga0059261_4100 0.49 +0.6
4,239,013 + Ga0059261_4100 0.49 +0.5
4,239,259 + Ga0059261_4100 0.65 +0.1
4,239,260 - Ga0059261_4100 0.65 +0.5
4,239,559 + Ga0059261_4100 0.83 -0.4
4,239,560 - Ga0059261_4100 0.83 +0.5
4,239,631 + Ga0059261_4100 0.88 -0.7
4,239,631 + Ga0059261_4100 0.88 +0.4
4,239,631 + Ga0059261_4100 0.88 +0.2
4,239,637 + Ga0059261_4100 0.88 +0.7
4,239,637 + Ga0059261_4100 0.88 -0.1
4,239,637 + Ga0059261_4100 0.88 +2.0
4,239,638 - Ga0059261_4100 0.88 +0.5
4,239,638 - Ga0059261_4100 0.88 +0.0
4,239,706 - +0.3
4,239,814 + -0.2
4,239,814 + -0.3
4,239,814 + -0.0
4,239,815 - +0.1
4,239,973 + Ga0059261_4101 0.16 +0.2
4,239,974 - Ga0059261_4101 0.16 -0.5
4,240,090 + Ga0059261_4101 0.27 -0.5
4,240,090 + Ga0059261_4101 0.27 -0.1
4,240,090 + +1.2
4,240,090 + Ga0059261_4101 0.27 +1.6
4,240,090 + Ga0059261_4101 0.27 +0.3
4,240,090 + Ga0059261_4101 0.27 +0.3
4,240,091 - Ga0059261_4101 0.27 +0.3
4,240,091 - Ga0059261_4101 0.27 +2.3
4,240,091 - Ga0059261_4101 0.27 +0.5
4,240,094 + Ga0059261_4101 0.27 -1.0
4,240,094 + Ga0059261_4101 0.27 +1.3
4,240,094 + Ga0059261_4101 0.27 -0.4
4,240,094 + Ga0059261_4101 0.27 +0.4
4,240,094 + Ga0059261_4101 0.27 -1.7
4,240,094 + Ga0059261_4101 0.27 -0.0
4,240,094 + Ga0059261_4101 0.27 -0.3
4,240,094 + Ga0059261_4101 0.27 +0.1
4,240,094 + Ga0059261_4101 0.27 -0.7
4,240,094 + Ga0059261_4101 0.27 -0.3
4,240,094 + Ga0059261_4101 0.27 -0.0
4,240,094 + Ga0059261_4101 0.27 +0.5
4,240,094 + Ga0059261_4101 0.27 +1.3
4,240,095 - Ga0059261_4101 0.28 +0.2
4,240,095 - Ga0059261_4101 0.28 -0.2
4,240,095 - Ga0059261_4101 0.28 +0.4
4,240,095 - Ga0059261_4101 0.28 -1.0
4,240,095 - Ga0059261_4101 0.28 +0.2
4,240,095 - Ga0059261_4101 0.28 +0.4
4,240,095 - Ga0059261_4101 0.28 -0.2
4,240,252 + Ga0059261_4101 0.43 -1.3
4,240,253 - Ga0059261_4101 0.43 -0.7
4,240,253 - Ga0059261_4101 0.43 +0.1
4,240,253 - Ga0059261_4101 0.43 -0.7
4,240,253 - Ga0059261_4101 0.43 +0.2
4,240,299 + Ga0059261_4101 0.48 +0.3
4,240,299 + Ga0059261_4101 0.48 -0.3
4,240,299 + Ga0059261_4101 0.48 +0.8
4,240,299 + Ga0059261_4101 0.48 -0.2
4,240,299 + Ga0059261_4101 0.48 +0.7
4,240,299 + +0.2
4,240,300 - Ga0059261_4101 0.48 +0.3
4,240,300 - Ga0059261_4101 0.48 -0.5
4,240,300 - Ga0059261_4101 0.48 +0.8
4,240,300 - Ga0059261_4101 0.48 +0.3
4,240,304 - Ga0059261_4101 0.48 +0.6
4,240,314 - Ga0059261_4101 0.49 +0.3
4,240,417 + Ga0059261_4101 0.59 +0.5
4,240,417 + Ga0059261_4101 0.59 -0.9
4,240,417 + Ga0059261_4101 0.59 -0.0
4,240,417 + Ga0059261_4101 0.59 +0.0
4,240,417 + Ga0059261_4101 0.59 -0.5
4,240,417 + Ga0059261_4101 0.59 -0.3
4,240,417 + Ga0059261_4101 0.59 +0.4
4,240,418 - Ga0059261_4101 0.59 -1.5
4,240,418 - Ga0059261_4101 0.59 -0.1
4,240,418 - Ga0059261_4101 0.59 +1.8
4,240,418 - Ga0059261_4101 0.59 -1.7
4,240,477 + Ga0059261_4101 0.65 +0.9
4,240,477 + Ga0059261_4101 0.65 -0.2
4,240,477 + Ga0059261_4101 0.65 +0.0
4,240,478 - Ga0059261_4101 0.65 -0.2
4,240,478 - Ga0059261_4101 0.65 +0.0
4,240,478 - Ga0059261_4101 0.65 +0.6
4,240,478 - Ga0059261_4101 0.65 -0.3
4,240,478 - Ga0059261_4101 0.65 -0.6
4,240,478 - Ga0059261_4101 0.65 +0.2
4,240,588 + Ga0059261_4101 0.76 -2.7
4,240,589 - Ga0059261_4101 0.76 +0.1
4,240,612 + Ga0059261_4101 0.78 +0.0
4,240,613 - Ga0059261_4101 0.78 -1.0
4,240,732 + Ga0059261_4101 0.90 +1.1
4,240,732 + Ga0059261_4101 0.90 -0.2
4,240,771 + -0.7

Or see this region's nucleotide sequence