Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3070 and Ga0059261_3071 are separated by 2 nucleotides Ga0059261_3071 and Ga0059261_3072 overlap by 4 nucleotides Ga0059261_3072 and Ga0059261_3073 are separated by 2 nucleotides
Ga0059261_3070: Ga0059261_3070 - Type IV secretory pathway, VirD4 components, at 3,210,819 to 3,212,843
_3070
Ga0059261_3071: Ga0059261_3071 - hypothetical protein, at 3,212,846 to 3,213,250
_3071
Ga0059261_3072: Ga0059261_3072 - P-type conjugative transfer ATPase TrbB, at 3,213,247 to 3,214,245
_3072
Ga0059261_3073: Ga0059261_3073 - Type IV secretory pathway, VirB2 components (pilins), at 3,214,248 to 3,214,577
_3073
Position (kb)
3212
3213
3214 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3211.914 kb on + strand, within Ga0059261_3070 at 3211.914 kb on + strand, within Ga0059261_3070 at 3211.914 kb on + strand, within Ga0059261_3070 at 3211.914 kb on + strand, within Ga0059261_3070 at 3211.915 kb on - strand, within Ga0059261_3070 at 3211.915 kb on - strand, within Ga0059261_3070 at 3212.021 kb on + strand, within Ga0059261_3070 at 3212.021 kb on + strand, within Ga0059261_3070 at 3212.021 kb on + strand, within Ga0059261_3070 at 3212.021 kb on + strand, within Ga0059261_3070 at 3212.022 kb on - strand, within Ga0059261_3070 at 3212.173 kb on - strand, within Ga0059261_3070 at 3212.173 kb on - strand, within Ga0059261_3070 at 3212.173 kb on - strand, within Ga0059261_3070 at 3212.253 kb on - strand, within Ga0059261_3070 at 3212.301 kb on + strand, within Ga0059261_3070 at 3212.301 kb on + strand, within Ga0059261_3070 at 3212.301 kb on + strand, within Ga0059261_3070 at 3212.301 kb on + strand, within Ga0059261_3070 at 3212.302 kb on - strand, within Ga0059261_3070 at 3212.302 kb on - strand, within Ga0059261_3070 at 3212.463 kb on + strand, within Ga0059261_3070 at 3212.477 kb on + strand, within Ga0059261_3070 at 3212.478 kb on - strand, within Ga0059261_3070 at 3212.478 kb on - strand, within Ga0059261_3070 at 3212.478 kb on - strand, within Ga0059261_3070 at 3212.478 kb on - strand, within Ga0059261_3070 at 3212.478 kb on - strand, within Ga0059261_3070 at 3212.478 kb on - strand, within Ga0059261_3070 at 3212.526 kb on + strand, within Ga0059261_3070 at 3212.526 kb on + strand, within Ga0059261_3070 at 3212.527 kb on - strand, within Ga0059261_3070 at 3212.527 kb on - strand, within Ga0059261_3070 at 3212.527 kb on - strand, within Ga0059261_3070 at 3212.796 kb on + strand at 3212.796 kb on + strand at 3212.797 kb on - strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.867 kb on + strand at 3212.868 kb on - strand at 3212.868 kb on - strand at 3212.868 kb on - strand at 3212.868 kb on - strand at 3212.868 kb on - strand at 3212.868 kb on - strand at 3212.868 kb on - strand at 3212.868 kb on - strand at 3212.868 kb on - strand at 3212.869 kb on + strand at 3212.869 kb on + strand at 3212.870 kb on - strand at 3212.870 kb on - strand at 3212.870 kb on - strand at 3212.870 kb on - strand at 3212.870 kb on - strand at 3213.092 kb on + strand, within Ga0059261_3071 at 3213.318 kb on + strand at 3213.318 kb on + strand at 3213.319 kb on - strand at 3213.348 kb on - strand, within Ga0059261_3072 at 3213.348 kb on - strand, within Ga0059261_3072 at 3213.362 kb on + strand, within Ga0059261_3072 at 3213.362 kb on + strand, within Ga0059261_3072 at 3213.362 kb on + strand, within Ga0059261_3072 at 3213.362 kb on + strand, within Ga0059261_3072 at 3213.362 kb on + strand, within Ga0059261_3072 at 3213.363 kb on - strand, within Ga0059261_3072 at 3213.363 kb on - strand, within Ga0059261_3072 at 3213.363 kb on - strand, within Ga0059261_3072 at 3213.453 kb on + strand, within Ga0059261_3072 at 3213.454 kb on - strand, within Ga0059261_3072 at 3213.481 kb on - strand, within Ga0059261_3072 at 3213.622 kb on + strand, within Ga0059261_3072 at 3213.622 kb on + strand, within Ga0059261_3072 at 3213.622 kb on + strand, within Ga0059261_3072 at 3213.622 kb on + strand, within Ga0059261_3072 at 3213.622 kb on + strand, within Ga0059261_3072 at 3213.623 kb on - strand, within Ga0059261_3072 at 3213.623 kb on - strand, within Ga0059261_3072 at 3213.623 kb on - strand, within Ga0059261_3072 at 3213.623 kb on - strand, within Ga0059261_3072 at 3213.637 kb on + strand, within Ga0059261_3072 at 3213.637 kb on + strand, within Ga0059261_3072 at 3213.637 kb on + strand, within Ga0059261_3072 at 3213.637 kb on + strand, within Ga0059261_3072 at 3213.638 kb on - strand, within Ga0059261_3072 at 3213.638 kb on - strand, within Ga0059261_3072 at 3213.782 kb on + strand, within Ga0059261_3072 at 3213.782 kb on + strand, within Ga0059261_3072 at 3213.783 kb on - strand, within Ga0059261_3072 at 3213.939 kb on - strand, within Ga0059261_3072 at 3213.960 kb on + strand, within Ga0059261_3072 at 3213.960 kb on + strand, within Ga0059261_3072 at 3213.960 kb on + strand, within Ga0059261_3072 at 3213.961 kb on - strand, within Ga0059261_3072 at 3213.961 kb on - strand, within Ga0059261_3072 at 3213.961 kb on - strand, within Ga0059261_3072 at 3214.002 kb on + strand, within Ga0059261_3072 at 3214.003 kb on - strand at 3214.017 kb on + strand, within Ga0059261_3072 at 3214.018 kb on - strand, within Ga0059261_3072 at 3214.018 kb on - strand, within Ga0059261_3072 at 3214.192 kb on + strand at 3214.192 kb on + strand at 3214.192 kb on + strand at 3214.193 kb on - strand at 3214.193 kb on - strand at 3214.193 kb on - strand at 3214.193 kb on - strand at 3214.193 kb on - strand at 3214.193 kb on - strand at 3214.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 3,211,914 + Ga0059261_3070 0.54 -0.2 3,211,914 + Ga0059261_3070 0.54 +0.1 3,211,914 + Ga0059261_3070 0.54 -0.1 3,211,914 + Ga0059261_3070 0.54 -0.6 3,211,915 - Ga0059261_3070 0.54 +0.8 3,211,915 - Ga0059261_3070 0.54 +0.0 3,212,021 + Ga0059261_3070 0.59 -0.1 3,212,021 + Ga0059261_3070 0.59 -1.5 3,212,021 + Ga0059261_3070 0.59 -0.2 3,212,021 + Ga0059261_3070 0.59 +1.1 3,212,022 - Ga0059261_3070 0.59 +0.5 3,212,173 - Ga0059261_3070 0.67 +0.2 3,212,173 - Ga0059261_3070 0.67 -0.2 3,212,173 - Ga0059261_3070 0.67 -0.1 3,212,253 - Ga0059261_3070 0.71 +0.7 3,212,301 + Ga0059261_3070 0.73 +0.1 3,212,301 + Ga0059261_3070 0.73 +0.1 3,212,301 + Ga0059261_3070 0.73 -0.1 3,212,301 + Ga0059261_3070 0.73 +0.4 3,212,302 - Ga0059261_3070 0.73 -1.5 3,212,302 - Ga0059261_3070 0.73 +0.3 3,212,463 + Ga0059261_3070 0.81 +0.2 3,212,477 + Ga0059261_3070 0.82 -0.0 3,212,478 - Ga0059261_3070 0.82 -0.4 3,212,478 - Ga0059261_3070 0.82 -0.8 3,212,478 - Ga0059261_3070 0.82 -0.3 3,212,478 - Ga0059261_3070 0.82 +0.9 3,212,478 - Ga0059261_3070 0.82 -0.9 3,212,478 - Ga0059261_3070 0.82 -0.3 3,212,526 + Ga0059261_3070 0.84 -0.4 3,212,526 + Ga0059261_3070 0.84 +0.1 3,212,527 - Ga0059261_3070 0.84 +0.8 3,212,527 - Ga0059261_3070 0.84 -0.1 3,212,527 - Ga0059261_3070 0.84 +0.3 3,212,796 + -0.9 3,212,796 + -1.1 3,212,797 - +0.3 3,212,867 + +0.5 3,212,867 + -0.5 3,212,867 + -0.7 3,212,867 + +0.3 3,212,867 + +0.4 3,212,867 + +1.3 3,212,867 + -0.2 3,212,867 + -2.3 3,212,867 + +0.2 3,212,867 + -0.7 3,212,867 + -0.1 3,212,867 + +0.1 3,212,867 + +0.3 3,212,867 + -0.5 3,212,867 + +0.3 3,212,868 - -0.4 3,212,868 - -0.5 3,212,868 - +0.6 3,212,868 - +0.1 3,212,868 - +0.3 3,212,868 - -1.4 3,212,868 - -1.1 3,212,868 - -0.0 3,212,868 - -0.1 3,212,869 + +0.1 3,212,869 + -0.1 3,212,870 - +0.1 3,212,870 - -0.2 3,212,870 - +0.9 3,212,870 - +0.1 3,212,870 - -0.0 3,213,092 + Ga0059261_3071 0.61 -0.4 3,213,318 + -0.1 3,213,318 + +0.3 3,213,319 - +0.6 3,213,348 - Ga0059261_3072 0.10 +0.2 3,213,348 - Ga0059261_3072 0.10 -1.3 3,213,362 + Ga0059261_3072 0.12 -0.2 3,213,362 + Ga0059261_3072 0.12 +0.7 3,213,362 + Ga0059261_3072 0.12 -2.1 3,213,362 + Ga0059261_3072 0.12 +1.3 3,213,362 + Ga0059261_3072 0.12 -0.1 3,213,363 - Ga0059261_3072 0.12 +2.0 3,213,363 - Ga0059261_3072 0.12 +0.3 3,213,363 - Ga0059261_3072 0.12 -0.0 3,213,453 + Ga0059261_3072 0.21 +0.7 3,213,454 - Ga0059261_3072 0.21 -0.2 3,213,481 - Ga0059261_3072 0.23 -0.1 3,213,622 + Ga0059261_3072 0.38 +0.2 3,213,622 + Ga0059261_3072 0.38 +0.5 3,213,622 + Ga0059261_3072 0.38 +0.5 3,213,622 + Ga0059261_3072 0.38 -0.5 3,213,622 + Ga0059261_3072 0.38 +0.9 3,213,623 - Ga0059261_3072 0.38 -0.5 3,213,623 - Ga0059261_3072 0.38 -0.0 3,213,623 - Ga0059261_3072 0.38 +0.6 3,213,623 - Ga0059261_3072 0.38 -0.1 3,213,637 + Ga0059261_3072 0.39 +0.5 3,213,637 + Ga0059261_3072 0.39 +0.9 3,213,637 + Ga0059261_3072 0.39 +1.4 3,213,637 + Ga0059261_3072 0.39 -0.1 3,213,638 - Ga0059261_3072 0.39 +1.1 3,213,638 - Ga0059261_3072 0.39 -0.3 3,213,782 + Ga0059261_3072 0.54 +0.8 3,213,782 + Ga0059261_3072 0.54 +0.4 3,213,783 - Ga0059261_3072 0.54 -0.0 3,213,939 - Ga0059261_3072 0.69 -0.9 3,213,960 + Ga0059261_3072 0.71 -0.1 3,213,960 + Ga0059261_3072 0.71 +0.7 3,213,960 + Ga0059261_3072 0.71 -0.2 3,213,961 - Ga0059261_3072 0.71 +0.3 3,213,961 - Ga0059261_3072 0.71 +0.3 3,213,961 - Ga0059261_3072 0.71 -0.0 3,214,002 + Ga0059261_3072 0.76 +0.6 3,214,003 - +0.1 3,214,017 + Ga0059261_3072 0.77 +0.1 3,214,018 - Ga0059261_3072 0.77 +0.5 3,214,018 - Ga0059261_3072 0.77 +0.1 3,214,192 + -0.3 3,214,192 + +0.7 3,214,192 + -0.4 3,214,193 - -0.9 3,214,193 - +0.2 3,214,193 - +3.3 3,214,193 - +0.4 3,214,193 - +0.3 3,214,193 - +0.4 3,214,193 - -0.6
Or see this region's nucleotide sequence