Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2915 and Ga0059261_2916 overlap by 4 nucleotides Ga0059261_2916 and Ga0059261_2917 are separated by 121 nucleotides
Ga0059261_2915: Ga0059261_2915 - Type IV secretory pathway, VirB4 components, at 3,023,538 to 3,025,997
_2915
Ga0059261_2916: Ga0059261_2916 - P-type conjugative transfer protein TrbJ, at 3,025,994 to 3,026,719
_2916
Ga0059261_2917: Ga0059261_2917 - P-type conjugative transfer protein TrbL, at 3,026,841 to 3,028,136
_2917
Position (kb)
3025
3026
3027 Strain fitness (log2 ratio)
-1
0
1
2 at 3025.088 kb on + strand, within Ga0059261_2915 at 3025.089 kb on - strand, within Ga0059261_2915 at 3025.273 kb on + strand, within Ga0059261_2915 at 3025.273 kb on + strand, within Ga0059261_2915 at 3025.274 kb on - strand, within Ga0059261_2915 at 3025.274 kb on - strand, within Ga0059261_2915 at 3025.274 kb on - strand, within Ga0059261_2915 at 3025.274 kb on - strand, within Ga0059261_2915 at 3025.274 kb on - strand, within Ga0059261_2915 at 3025.274 kb on - strand, within Ga0059261_2915 at 3025.274 kb on - strand, within Ga0059261_2915 at 3025.274 kb on - strand, within Ga0059261_2915 at 3025.293 kb on + strand, within Ga0059261_2915 at 3025.293 kb on + strand, within Ga0059261_2915 at 3025.293 kb on + strand, within Ga0059261_2915 at 3025.293 kb on + strand, within Ga0059261_2915 at 3025.294 kb on - strand, within Ga0059261_2915 at 3025.294 kb on - strand, within Ga0059261_2915 at 3025.294 kb on - strand, within Ga0059261_2915 at 3025.294 kb on - strand, within Ga0059261_2915 at 3025.294 kb on - strand, within Ga0059261_2915 at 3025.295 kb on + strand, within Ga0059261_2915 at 3025.295 kb on + strand, within Ga0059261_2915 at 3025.295 kb on + strand, within Ga0059261_2915 at 3025.296 kb on - strand, within Ga0059261_2915 at 3025.296 kb on - strand, within Ga0059261_2915 at 3025.296 kb on - strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.422 kb on + strand at 3025.422 kb on + strand, within Ga0059261_2915 at 3025.423 kb on - strand, within Ga0059261_2915 at 3025.423 kb on - strand, within Ga0059261_2915 at 3025.483 kb on + strand, within Ga0059261_2915 at 3025.695 kb on + strand, within Ga0059261_2915 at 3025.695 kb on + strand, within Ga0059261_2915 at 3025.695 kb on + strand, within Ga0059261_2915 at 3025.695 kb on + strand, within Ga0059261_2915 at 3025.695 kb on + strand, within Ga0059261_2915 at 3025.695 kb on + strand, within Ga0059261_2915 at 3025.695 kb on + strand, within Ga0059261_2915 at 3025.696 kb on - strand, within Ga0059261_2915 at 3025.696 kb on - strand, within Ga0059261_2915 at 3025.696 kb on - strand at 3025.696 kb on - strand at 3025.696 kb on - strand, within Ga0059261_2915 at 3025.696 kb on - strand, within Ga0059261_2915 at 3025.761 kb on + strand at 3025.761 kb on + strand at 3025.761 kb on + strand at 3025.761 kb on + strand at 3025.761 kb on + strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.762 kb on - strand at 3025.764 kb on + strand at 3025.764 kb on + strand at 3025.764 kb on + strand at 3025.764 kb on + strand at 3025.765 kb on - strand at 3025.765 kb on - strand at 3025.765 kb on - strand at 3025.856 kb on + strand at 3026.003 kb on + strand at 3026.003 kb on + strand at 3026.003 kb on + strand at 3026.003 kb on + strand at 3026.003 kb on + strand at 3026.003 kb on + strand at 3026.004 kb on - strand at 3026.004 kb on - strand at 3026.004 kb on - strand at 3026.004 kb on - strand at 3026.004 kb on - strand at 3026.068 kb on + strand, within Ga0059261_2916 at 3026.068 kb on + strand, within Ga0059261_2916 at 3026.068 kb on + strand, within Ga0059261_2916 at 3026.069 kb on - strand, within Ga0059261_2916 at 3026.112 kb on - strand, within Ga0059261_2916 at 3026.159 kb on - strand, within Ga0059261_2916 at 3026.159 kb on - strand, within Ga0059261_2916 at 3026.159 kb on - strand, within Ga0059261_2916 at 3026.702 kb on + strand at 3026.702 kb on + strand at 3026.702 kb on + strand at 3026.703 kb on - strand at 3026.703 kb on - strand at 3026.703 kb on - strand at 3026.703 kb on - strand at 3026.703 kb on - strand at 3026.840 kb on + strand at 3026.840 kb on + strand at 3026.840 kb on + strand at 3026.840 kb on + strand at 3026.840 kb on + strand at 3026.840 kb on + strand at 3026.840 kb on + strand at 3026.841 kb on - strand at 3026.841 kb on - strand at 3026.841 kb on - strand at 3026.889 kb on + strand at 3026.889 kb on + strand at 3026.890 kb on - strand at 3026.890 kb on - strand at 3026.890 kb on - strand at 3026.963 kb on + strand at 3026.963 kb on + strand at 3026.964 kb on - strand at 3026.964 kb on - strand at 3027.036 kb on + strand, within Ga0059261_2917 at 3027.036 kb on + strand, within Ga0059261_2917 at 3027.036 kb on + strand, within Ga0059261_2917 at 3027.036 kb on + strand, within Ga0059261_2917 at 3027.036 kb on + strand, within Ga0059261_2917 at 3027.036 kb on + strand, within Ga0059261_2917 at 3027.036 kb on + strand, within Ga0059261_2917 at 3027.036 kb on + strand, within Ga0059261_2917 at 3027.037 kb on - strand, within Ga0059261_2917 at 3027.037 kb on - strand at 3027.037 kb on - strand, within Ga0059261_2917 at 3027.037 kb on - strand, within Ga0059261_2917 at 3027.037 kb on - strand, within Ga0059261_2917 at 3027.037 kb on - strand, within Ga0059261_2917 at 3027.058 kb on + strand, within Ga0059261_2917 at 3027.058 kb on + strand, within Ga0059261_2917 at 3027.058 kb on + strand, within Ga0059261_2917 at 3027.058 kb on + strand, within Ga0059261_2917 at 3027.059 kb on - strand, within Ga0059261_2917 at 3027.059 kb on - strand, within Ga0059261_2917 at 3027.394 kb on + strand, within Ga0059261_2917 at 3027.394 kb on + strand, within Ga0059261_2917 at 3027.394 kb on + strand, within Ga0059261_2917 at 3027.394 kb on + strand, within Ga0059261_2917 at 3027.499 kb on - strand, within Ga0059261_2917 at 3027.499 kb on - strand, within Ga0059261_2917 at 3027.499 kb on - strand, within Ga0059261_2917
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 3,025,088 + Ga0059261_2915 0.63 -0.1 3,025,089 - Ga0059261_2915 0.63 -0.1 3,025,273 + Ga0059261_2915 0.71 +0.6 3,025,273 + Ga0059261_2915 0.71 -0.4 3,025,274 - Ga0059261_2915 0.71 +0.1 3,025,274 - Ga0059261_2915 0.71 -0.4 3,025,274 - Ga0059261_2915 0.71 -0.2 3,025,274 - Ga0059261_2915 0.71 +0.2 3,025,274 - Ga0059261_2915 0.71 +0.2 3,025,274 - Ga0059261_2915 0.71 -0.8 3,025,274 - Ga0059261_2915 0.71 +0.5 3,025,274 - Ga0059261_2915 0.71 +0.2 3,025,293 + Ga0059261_2915 0.71 -0.8 3,025,293 + Ga0059261_2915 0.71 -0.2 3,025,293 + Ga0059261_2915 0.71 -0.3 3,025,293 + Ga0059261_2915 0.71 +0.1 3,025,294 - Ga0059261_2915 0.71 -0.2 3,025,294 - Ga0059261_2915 0.71 +0.1 3,025,294 - Ga0059261_2915 0.71 +0.6 3,025,294 - Ga0059261_2915 0.71 +0.5 3,025,294 - Ga0059261_2915 0.71 +0.2 3,025,295 + Ga0059261_2915 0.71 -0.2 3,025,295 + Ga0059261_2915 0.71 +0.1 3,025,295 + Ga0059261_2915 0.71 -0.6 3,025,296 - Ga0059261_2915 0.71 -0.3 3,025,296 - Ga0059261_2915 0.71 +0.6 3,025,296 - Ga0059261_2915 0.71 -1.2 3,025,422 + Ga0059261_2915 0.77 +0.6 3,025,422 + Ga0059261_2915 0.77 -0.5 3,025,422 + Ga0059261_2915 0.77 +1.0 3,025,422 + Ga0059261_2915 0.77 -0.5 3,025,422 + Ga0059261_2915 0.77 -0.5 3,025,422 + Ga0059261_2915 0.77 -0.1 3,025,422 + Ga0059261_2915 0.77 -0.3 3,025,422 + Ga0059261_2915 0.77 -0.8 3,025,422 + Ga0059261_2915 0.77 +0.3 3,025,422 + Ga0059261_2915 0.77 +0.2 3,025,422 + +0.3 3,025,422 + Ga0059261_2915 0.77 +0.8 3,025,423 - Ga0059261_2915 0.77 -0.1 3,025,423 - Ga0059261_2915 0.77 +0.1 3,025,483 + Ga0059261_2915 0.79 -0.4 3,025,695 + Ga0059261_2915 0.88 +0.0 3,025,695 + Ga0059261_2915 0.88 -0.1 3,025,695 + Ga0059261_2915 0.88 -0.6 3,025,695 + Ga0059261_2915 0.88 +0.6 3,025,695 + Ga0059261_2915 0.88 +0.3 3,025,695 + Ga0059261_2915 0.88 -1.3 3,025,695 + Ga0059261_2915 0.88 +0.1 3,025,696 - Ga0059261_2915 0.88 +0.3 3,025,696 - Ga0059261_2915 0.88 -0.7 3,025,696 - +1.3 3,025,696 - +2.0 3,025,696 - Ga0059261_2915 0.88 +1.5 3,025,696 - Ga0059261_2915 0.88 +0.6 3,025,761 + -0.4 3,025,761 + +0.7 3,025,761 + +0.2 3,025,761 + -0.3 3,025,761 + -0.0 3,025,762 - +1.7 3,025,762 - +0.6 3,025,762 - -0.3 3,025,762 - +0.2 3,025,762 - +0.0 3,025,762 - +0.1 3,025,762 - -1.5 3,025,762 - -0.1 3,025,762 - +0.4 3,025,762 - +0.1 3,025,762 - -0.7 3,025,764 + -0.9 3,025,764 + +0.6 3,025,764 + +0.7 3,025,764 + +0.4 3,025,765 - +0.4 3,025,765 - +0.2 3,025,765 - +0.0 3,025,856 + -1.6 3,026,003 + -0.4 3,026,003 + +0.4 3,026,003 + -0.0 3,026,003 + -0.5 3,026,003 + -0.1 3,026,003 + +0.2 3,026,004 - +1.7 3,026,004 - -0.2 3,026,004 - +0.1 3,026,004 - +0.8 3,026,004 - +0.3 3,026,068 + Ga0059261_2916 0.10 +0.3 3,026,068 + Ga0059261_2916 0.10 -0.7 3,026,068 + Ga0059261_2916 0.10 +0.4 3,026,069 - Ga0059261_2916 0.10 +1.1 3,026,112 - Ga0059261_2916 0.16 +1.0 3,026,159 - Ga0059261_2916 0.23 +0.2 3,026,159 - Ga0059261_2916 0.23 -0.2 3,026,159 - Ga0059261_2916 0.23 +0.4 3,026,702 + +0.1 3,026,702 + -1.1 3,026,702 + -0.8 3,026,703 - +0.7 3,026,703 - +0.1 3,026,703 - +0.3 3,026,703 - +1.7 3,026,703 - -0.4 3,026,840 + +0.3 3,026,840 + -0.4 3,026,840 + -0.0 3,026,840 + +0.2 3,026,840 + +1.6 3,026,840 + -0.6 3,026,840 + -0.6 3,026,841 - -1.0 3,026,841 - -1.1 3,026,841 - -0.2 3,026,889 + +0.6 3,026,889 + -0.2 3,026,890 - -0.9 3,026,890 - +0.2 3,026,890 - -0.3 3,026,963 + +0.5 3,026,963 + -0.1 3,026,964 - -1.0 3,026,964 - -1.3 3,027,036 + Ga0059261_2917 0.15 -0.1 3,027,036 + Ga0059261_2917 0.15 +0.7 3,027,036 + Ga0059261_2917 0.15 -0.2 3,027,036 + Ga0059261_2917 0.15 +0.1 3,027,036 + Ga0059261_2917 0.15 +0.0 3,027,036 + Ga0059261_2917 0.15 +0.4 3,027,036 + Ga0059261_2917 0.15 -0.4 3,027,036 + Ga0059261_2917 0.15 -0.6 3,027,037 - Ga0059261_2917 0.15 +0.5 3,027,037 - +1.7 3,027,037 - Ga0059261_2917 0.15 -0.6 3,027,037 - Ga0059261_2917 0.15 -0.2 3,027,037 - Ga0059261_2917 0.15 +0.4 3,027,037 - Ga0059261_2917 0.15 -0.4 3,027,058 + Ga0059261_2917 0.17 -0.8 3,027,058 + Ga0059261_2917 0.17 -0.3 3,027,058 + Ga0059261_2917 0.17 -0.7 3,027,058 + Ga0059261_2917 0.17 -0.4 3,027,059 - Ga0059261_2917 0.17 -0.4 3,027,059 - Ga0059261_2917 0.17 +0.4 3,027,394 + Ga0059261_2917 0.43 +0.0 3,027,394 + Ga0059261_2917 0.43 -0.5 3,027,394 + Ga0059261_2917 0.43 -0.4 3,027,394 + Ga0059261_2917 0.43 -0.6 3,027,499 - Ga0059261_2917 0.51 -0.1 3,027,499 - Ga0059261_2917 0.51 -1.7 3,027,499 - Ga0059261_2917 0.51 -1.0
Or see this region's nucleotide sequence