Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2916

Experiment: Cisplatin 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2915 and Ga0059261_2916 overlap by 4 nucleotidesGa0059261_2916 and Ga0059261_2917 are separated by 121 nucleotides Ga0059261_2915: Ga0059261_2915 - Type IV secretory pathway, VirB4 components, at 3,023,538 to 3,025,997 _2915 Ga0059261_2916: Ga0059261_2916 - P-type conjugative transfer protein TrbJ, at 3,025,994 to 3,026,719 _2916 Ga0059261_2917: Ga0059261_2917 - P-type conjugative transfer protein TrbL, at 3,026,841 to 3,028,136 _2917 Position (kb) 3025 3026 3027Strain fitness (log2 ratio) -1 0 1 2at 3025.088 kb on + strand, within Ga0059261_2915at 3025.089 kb on - strand, within Ga0059261_2915at 3025.273 kb on + strand, within Ga0059261_2915at 3025.273 kb on + strand, within Ga0059261_2915at 3025.274 kb on - strand, within Ga0059261_2915at 3025.274 kb on - strand, within Ga0059261_2915at 3025.274 kb on - strand, within Ga0059261_2915at 3025.274 kb on - strand, within Ga0059261_2915at 3025.274 kb on - strand, within Ga0059261_2915at 3025.274 kb on - strand, within Ga0059261_2915at 3025.274 kb on - strand, within Ga0059261_2915at 3025.274 kb on - strand, within Ga0059261_2915at 3025.293 kb on + strand, within Ga0059261_2915at 3025.293 kb on + strand, within Ga0059261_2915at 3025.293 kb on + strand, within Ga0059261_2915at 3025.293 kb on + strand, within Ga0059261_2915at 3025.294 kb on - strand, within Ga0059261_2915at 3025.294 kb on - strand, within Ga0059261_2915at 3025.294 kb on - strand, within Ga0059261_2915at 3025.294 kb on - strand, within Ga0059261_2915at 3025.294 kb on - strand, within Ga0059261_2915at 3025.295 kb on + strand, within Ga0059261_2915at 3025.295 kb on + strand, within Ga0059261_2915at 3025.295 kb on + strand, within Ga0059261_2915at 3025.296 kb on - strand, within Ga0059261_2915at 3025.296 kb on - strand, within Ga0059261_2915at 3025.296 kb on - strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strand, within Ga0059261_2915at 3025.422 kb on + strandat 3025.422 kb on + strand, within Ga0059261_2915at 3025.423 kb on - strand, within Ga0059261_2915at 3025.423 kb on - strand, within Ga0059261_2915at 3025.483 kb on + strand, within Ga0059261_2915at 3025.695 kb on + strand, within Ga0059261_2915at 3025.695 kb on + strand, within Ga0059261_2915at 3025.695 kb on + strand, within Ga0059261_2915at 3025.695 kb on + strand, within Ga0059261_2915at 3025.695 kb on + strand, within Ga0059261_2915at 3025.695 kb on + strand, within Ga0059261_2915at 3025.695 kb on + strand, within Ga0059261_2915at 3025.696 kb on - strand, within Ga0059261_2915at 3025.696 kb on - strand, within Ga0059261_2915at 3025.696 kb on - strandat 3025.696 kb on - strandat 3025.696 kb on - strand, within Ga0059261_2915at 3025.696 kb on - strand, within Ga0059261_2915at 3025.761 kb on + strandat 3025.761 kb on + strandat 3025.761 kb on + strandat 3025.761 kb on + strandat 3025.761 kb on + strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.762 kb on - strandat 3025.764 kb on + strandat 3025.764 kb on + strandat 3025.764 kb on + strandat 3025.764 kb on + strandat 3025.765 kb on - strandat 3025.765 kb on - strandat 3025.765 kb on - strandat 3025.856 kb on + strandat 3026.003 kb on + strandat 3026.003 kb on + strandat 3026.003 kb on + strandat 3026.003 kb on + strandat 3026.003 kb on + strandat 3026.003 kb on + strandat 3026.004 kb on - strandat 3026.004 kb on - strandat 3026.004 kb on - strandat 3026.004 kb on - strandat 3026.004 kb on - strandat 3026.068 kb on + strand, within Ga0059261_2916at 3026.068 kb on + strand, within Ga0059261_2916at 3026.068 kb on + strand, within Ga0059261_2916at 3026.069 kb on - strand, within Ga0059261_2916at 3026.112 kb on - strand, within Ga0059261_2916at 3026.159 kb on - strand, within Ga0059261_2916at 3026.159 kb on - strand, within Ga0059261_2916at 3026.159 kb on - strand, within Ga0059261_2916at 3026.702 kb on + strandat 3026.702 kb on + strandat 3026.702 kb on + strandat 3026.703 kb on - strandat 3026.703 kb on - strandat 3026.703 kb on - strandat 3026.703 kb on - strandat 3026.703 kb on - strandat 3026.840 kb on + strandat 3026.840 kb on + strandat 3026.840 kb on + strandat 3026.840 kb on + strandat 3026.840 kb on + strandat 3026.840 kb on + strandat 3026.840 kb on + strandat 3026.841 kb on - strandat 3026.841 kb on - strandat 3026.841 kb on - strandat 3026.889 kb on + strandat 3026.889 kb on + strandat 3026.890 kb on - strandat 3026.890 kb on - strandat 3026.890 kb on - strandat 3026.963 kb on + strandat 3026.963 kb on + strandat 3026.964 kb on - strandat 3026.964 kb on - strandat 3027.036 kb on + strand, within Ga0059261_2917at 3027.036 kb on + strand, within Ga0059261_2917at 3027.036 kb on + strand, within Ga0059261_2917at 3027.036 kb on + strand, within Ga0059261_2917at 3027.036 kb on + strand, within Ga0059261_2917at 3027.036 kb on + strand, within Ga0059261_2917at 3027.036 kb on + strand, within Ga0059261_2917at 3027.036 kb on + strand, within Ga0059261_2917at 3027.037 kb on - strand, within Ga0059261_2917at 3027.037 kb on - strandat 3027.037 kb on - strand, within Ga0059261_2917at 3027.037 kb on - strand, within Ga0059261_2917at 3027.037 kb on - strand, within Ga0059261_2917at 3027.037 kb on - strand, within Ga0059261_2917at 3027.058 kb on + strand, within Ga0059261_2917at 3027.058 kb on + strand, within Ga0059261_2917at 3027.058 kb on + strand, within Ga0059261_2917at 3027.058 kb on + strand, within Ga0059261_2917at 3027.059 kb on - strand, within Ga0059261_2917at 3027.059 kb on - strand, within Ga0059261_2917at 3027.394 kb on + strand, within Ga0059261_2917at 3027.394 kb on + strand, within Ga0059261_2917at 3027.394 kb on + strand, within Ga0059261_2917at 3027.394 kb on + strand, within Ga0059261_2917at 3027.499 kb on - strand, within Ga0059261_2917at 3027.499 kb on - strand, within Ga0059261_2917at 3027.499 kb on - strand, within Ga0059261_2917

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
remove
3,025,088 + Ga0059261_2915 0.63 -0.1
3,025,089 - Ga0059261_2915 0.63 -0.1
3,025,273 + Ga0059261_2915 0.71 +0.6
3,025,273 + Ga0059261_2915 0.71 -0.4
3,025,274 - Ga0059261_2915 0.71 +0.1
3,025,274 - Ga0059261_2915 0.71 -0.4
3,025,274 - Ga0059261_2915 0.71 -0.2
3,025,274 - Ga0059261_2915 0.71 +0.2
3,025,274 - Ga0059261_2915 0.71 +0.2
3,025,274 - Ga0059261_2915 0.71 -0.8
3,025,274 - Ga0059261_2915 0.71 +0.5
3,025,274 - Ga0059261_2915 0.71 +0.2
3,025,293 + Ga0059261_2915 0.71 -0.8
3,025,293 + Ga0059261_2915 0.71 -0.2
3,025,293 + Ga0059261_2915 0.71 -0.3
3,025,293 + Ga0059261_2915 0.71 +0.1
3,025,294 - Ga0059261_2915 0.71 -0.2
3,025,294 - Ga0059261_2915 0.71 +0.1
3,025,294 - Ga0059261_2915 0.71 +0.6
3,025,294 - Ga0059261_2915 0.71 +0.5
3,025,294 - Ga0059261_2915 0.71 +0.2
3,025,295 + Ga0059261_2915 0.71 -0.2
3,025,295 + Ga0059261_2915 0.71 +0.1
3,025,295 + Ga0059261_2915 0.71 -0.6
3,025,296 - Ga0059261_2915 0.71 -0.3
3,025,296 - Ga0059261_2915 0.71 +0.6
3,025,296 - Ga0059261_2915 0.71 -1.2
3,025,422 + Ga0059261_2915 0.77 +0.6
3,025,422 + Ga0059261_2915 0.77 -0.5
3,025,422 + Ga0059261_2915 0.77 +1.0
3,025,422 + Ga0059261_2915 0.77 -0.5
3,025,422 + Ga0059261_2915 0.77 -0.5
3,025,422 + Ga0059261_2915 0.77 -0.1
3,025,422 + Ga0059261_2915 0.77 -0.3
3,025,422 + Ga0059261_2915 0.77 -0.8
3,025,422 + Ga0059261_2915 0.77 +0.3
3,025,422 + Ga0059261_2915 0.77 +0.2
3,025,422 + +0.3
3,025,422 + Ga0059261_2915 0.77 +0.8
3,025,423 - Ga0059261_2915 0.77 -0.1
3,025,423 - Ga0059261_2915 0.77 +0.1
3,025,483 + Ga0059261_2915 0.79 -0.4
3,025,695 + Ga0059261_2915 0.88 +0.0
3,025,695 + Ga0059261_2915 0.88 -0.1
3,025,695 + Ga0059261_2915 0.88 -0.6
3,025,695 + Ga0059261_2915 0.88 +0.6
3,025,695 + Ga0059261_2915 0.88 +0.3
3,025,695 + Ga0059261_2915 0.88 -1.3
3,025,695 + Ga0059261_2915 0.88 +0.1
3,025,696 - Ga0059261_2915 0.88 +0.3
3,025,696 - Ga0059261_2915 0.88 -0.7
3,025,696 - +1.3
3,025,696 - +2.0
3,025,696 - Ga0059261_2915 0.88 +1.5
3,025,696 - Ga0059261_2915 0.88 +0.6
3,025,761 + -0.4
3,025,761 + +0.7
3,025,761 + +0.2
3,025,761 + -0.3
3,025,761 + -0.0
3,025,762 - +1.7
3,025,762 - +0.6
3,025,762 - -0.3
3,025,762 - +0.2
3,025,762 - +0.0
3,025,762 - +0.1
3,025,762 - -1.5
3,025,762 - -0.1
3,025,762 - +0.4
3,025,762 - +0.1
3,025,762 - -0.7
3,025,764 + -0.9
3,025,764 + +0.6
3,025,764 + +0.7
3,025,764 + +0.4
3,025,765 - +0.4
3,025,765 - +0.2
3,025,765 - +0.0
3,025,856 + -1.6
3,026,003 + -0.4
3,026,003 + +0.4
3,026,003 + -0.0
3,026,003 + -0.5
3,026,003 + -0.1
3,026,003 + +0.2
3,026,004 - +1.7
3,026,004 - -0.2
3,026,004 - +0.1
3,026,004 - +0.8
3,026,004 - +0.3
3,026,068 + Ga0059261_2916 0.10 +0.3
3,026,068 + Ga0059261_2916 0.10 -0.7
3,026,068 + Ga0059261_2916 0.10 +0.4
3,026,069 - Ga0059261_2916 0.10 +1.1
3,026,112 - Ga0059261_2916 0.16 +1.0
3,026,159 - Ga0059261_2916 0.23 +0.2
3,026,159 - Ga0059261_2916 0.23 -0.2
3,026,159 - Ga0059261_2916 0.23 +0.4
3,026,702 + +0.1
3,026,702 + -1.1
3,026,702 + -0.8
3,026,703 - +0.7
3,026,703 - +0.1
3,026,703 - +0.3
3,026,703 - +1.7
3,026,703 - -0.4
3,026,840 + +0.3
3,026,840 + -0.4
3,026,840 + -0.0
3,026,840 + +0.2
3,026,840 + +1.6
3,026,840 + -0.6
3,026,840 + -0.6
3,026,841 - -1.0
3,026,841 - -1.1
3,026,841 - -0.2
3,026,889 + +0.6
3,026,889 + -0.2
3,026,890 - -0.9
3,026,890 - +0.2
3,026,890 - -0.3
3,026,963 + +0.5
3,026,963 + -0.1
3,026,964 - -1.0
3,026,964 - -1.3
3,027,036 + Ga0059261_2917 0.15 -0.1
3,027,036 + Ga0059261_2917 0.15 +0.7
3,027,036 + Ga0059261_2917 0.15 -0.2
3,027,036 + Ga0059261_2917 0.15 +0.1
3,027,036 + Ga0059261_2917 0.15 +0.0
3,027,036 + Ga0059261_2917 0.15 +0.4
3,027,036 + Ga0059261_2917 0.15 -0.4
3,027,036 + Ga0059261_2917 0.15 -0.6
3,027,037 - Ga0059261_2917 0.15 +0.5
3,027,037 - +1.7
3,027,037 - Ga0059261_2917 0.15 -0.6
3,027,037 - Ga0059261_2917 0.15 -0.2
3,027,037 - Ga0059261_2917 0.15 +0.4
3,027,037 - Ga0059261_2917 0.15 -0.4
3,027,058 + Ga0059261_2917 0.17 -0.8
3,027,058 + Ga0059261_2917 0.17 -0.3
3,027,058 + Ga0059261_2917 0.17 -0.7
3,027,058 + Ga0059261_2917 0.17 -0.4
3,027,059 - Ga0059261_2917 0.17 -0.4
3,027,059 - Ga0059261_2917 0.17 +0.4
3,027,394 + Ga0059261_2917 0.43 +0.0
3,027,394 + Ga0059261_2917 0.43 -0.5
3,027,394 + Ga0059261_2917 0.43 -0.4
3,027,394 + Ga0059261_2917 0.43 -0.6
3,027,499 - Ga0059261_2917 0.51 -0.1
3,027,499 - Ga0059261_2917 0.51 -1.7
3,027,499 - Ga0059261_2917 0.51 -1.0

Or see this region's nucleotide sequence