Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2691

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2690 and Ga0059261_2691 are separated by 49 nucleotidesGa0059261_2691 and Ga0059261_2692 are separated by 114 nucleotidesGa0059261_2692 and Ga0059261_2693 overlap by 4 nucleotides Ga0059261_2690: Ga0059261_2690 - riboflavin kinase/FMN adenylyltransferase, at 2,799,805 to 2,800,734 _2690 Ga0059261_2691: Ga0059261_2691 - Zn-dependent dipeptidase, microsomal dipeptidase homolog, at 2,800,784 to 2,801,956 _2691 Ga0059261_2692: Ga0059261_2692 - Dihydrofolate reductase, at 2,802,071 to 2,802,547 _2692 Ga0059261_2693: Ga0059261_2693 - thymidylate synthase, at 2,802,544 to 2,803,338 _2693 Position (kb) 2800 2801 2802Strain fitness (log2 ratio) -1 0 1at 2799.806 kb on + strandat 2799.806 kb on + strandat 2799.806 kb on + strandat 2799.806 kb on + strandat 2799.807 kb on - strandat 2799.807 kb on - strandat 2799.810 kb on + strandat 2799.810 kb on + strandat 2799.810 kb on + strandat 2799.810 kb on + strandat 2799.811 kb on - strandat 2799.811 kb on - strandat 2799.811 kb on - strandat 2800.745 kb on - strandat 2800.747 kb on - strandat 2801.044 kb on - strand, within Ga0059261_2691at 2801.044 kb on - strand, within Ga0059261_2691at 2801.640 kb on + strand, within Ga0059261_2691at 2801.640 kb on + strand, within Ga0059261_2691at 2801.641 kb on - strand, within Ga0059261_2691at 2801.641 kb on - strand, within Ga0059261_2691at 2802.067 kb on + strandat 2802.067 kb on + strandat 2802.068 kb on - strandat 2802.068 kb on - strandat 2802.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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2,799,806 + +0.3
2,799,806 + +1.2
2,799,806 + -0.4
2,799,806 + +0.4
2,799,807 - -1.0
2,799,807 - +0.1
2,799,810 + +0.5
2,799,810 + +0.0
2,799,810 + -1.2
2,799,810 + +0.3
2,799,811 - -0.8
2,799,811 - -0.5
2,799,811 - +0.0
2,800,745 - -0.7
2,800,747 - +0.2
2,801,044 - Ga0059261_2691 0.22 +1.0
2,801,044 - Ga0059261_2691 0.22 +0.7
2,801,640 + Ga0059261_2691 0.73 -0.2
2,801,640 + Ga0059261_2691 0.73 -1.0
2,801,641 - Ga0059261_2691 0.73 -0.2
2,801,641 - Ga0059261_2691 0.73 +0.5
2,802,067 + +0.8
2,802,067 + -0.6
2,802,068 - +0.0
2,802,068 - +0.5
2,802,068 - -0.3

Or see this region's nucleotide sequence