Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1478

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1475 and Ga0059261_1476 overlap by 4 nucleotidesGa0059261_1476 and Ga0059261_1477 overlap by 1 nucleotidesGa0059261_1477 and Ga0059261_1478 are separated by 144 nucleotidesGa0059261_1478 and Ga0059261_1479 overlap by 4 nucleotides Ga0059261_1475: Ga0059261_1475 - cysteine desulfurases, SufSfamily, at 1,559,552 to 1,560,763 _1475 Ga0059261_1476: Ga0059261_1476 - FeS assembly SUF system protein, at 1,560,760 to 1,561,227 _1476 Ga0059261_1477: Ga0059261_1477 - Iron-sulfur cluster assembly accessory protein, at 1,561,227 to 1,561,583 _1477 Ga0059261_1478: Ga0059261_1478 - Predicted dioxygenase of extradiol dioxygenase family, at 1,561,728 to 1,562,144 _1478 Ga0059261_1479: Ga0059261_1479 - Lactate dehydrogenase and related dehydrogenases, at 1,562,141 to 1,563,139 _1479 Position (kb) 1561 1562 1563Strain fitness (log2 ratio) -1 0 1at 1561.729 kb on + strandat 1561.729 kb on + strandat 1561.729 kb on + strandat 1561.729 kb on + strandat 1561.730 kb on - strandat 1562.083 kb on + strand, within Ga0059261_1478at 1562.083 kb on + strand, within Ga0059261_1478at 1562.084 kb on - strand, within Ga0059261_1478at 1562.201 kb on - strandat 1562.241 kb on + strand, within Ga0059261_1479at 1562.241 kb on + strand, within Ga0059261_1479at 1562.241 kb on + strand, within Ga0059261_1479at 1562.241 kb on + strand, within Ga0059261_1479at 1562.241 kb on + strand, within Ga0059261_1479at 1562.241 kb on + strand, within Ga0059261_1479at 1562.241 kb on + strand, within Ga0059261_1479at 1562.241 kb on + strand, within Ga0059261_1479at 1562.241 kb on + strand, within Ga0059261_1479at 1562.242 kb on - strandat 1562.242 kb on - strand, within Ga0059261_1479at 1562.242 kb on - strand, within Ga0059261_1479at 1562.242 kb on - strand, within Ga0059261_1479at 1562.242 kb on - strand, within Ga0059261_1479at 1562.242 kb on - strand, within Ga0059261_1479at 1562.242 kb on - strand, within Ga0059261_1479at 1562.242 kb on - strand, within Ga0059261_1479at 1562.257 kb on + strand, within Ga0059261_1479at 1562.257 kb on + strand, within Ga0059261_1479at 1562.257 kb on + strand, within Ga0059261_1479at 1562.258 kb on - strand, within Ga0059261_1479at 1562.258 kb on - strand, within Ga0059261_1479at 1562.418 kb on + strand, within Ga0059261_1479at 1562.418 kb on + strand, within Ga0059261_1479at 1562.418 kb on + strand, within Ga0059261_1479at 1562.418 kb on + strand, within Ga0059261_1479at 1562.419 kb on - strand, within Ga0059261_1479at 1562.419 kb on - strand, within Ga0059261_1479at 1562.507 kb on + strand, within Ga0059261_1479at 1562.595 kb on + strand, within Ga0059261_1479at 1562.595 kb on + strand, within Ga0059261_1479at 1562.595 kb on + strand, within Ga0059261_1479at 1562.596 kb on - strand, within Ga0059261_1479at 1562.596 kb on - strand, within Ga0059261_1479at 1562.875 kb on + strand, within Ga0059261_1479at 1562.953 kb on + strand, within Ga0059261_1479at 1562.953 kb on + strand, within Ga0059261_1479at 1562.953 kb on + strand, within Ga0059261_1479at 1562.954 kb on - strand, within Ga0059261_1479at 1563.046 kb on + strandat 1563.134 kb on + strandat 1563.134 kb on + strandat 1563.134 kb on + strandat 1563.135 kb on - strandat 1563.135 kb on - strandat 1563.135 kb on - strandat 1563.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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1,561,729 + -0.2
1,561,729 + -0.0
1,561,729 + +0.0
1,561,729 + -0.7
1,561,730 - -0.4
1,562,083 + Ga0059261_1478 0.85 -0.1
1,562,083 + Ga0059261_1478 0.85 +0.2
1,562,084 - Ga0059261_1478 0.85 +0.4
1,562,201 - +0.5
1,562,241 + Ga0059261_1479 0.10 -0.6
1,562,241 + Ga0059261_1479 0.10 +0.7
1,562,241 + Ga0059261_1479 0.10 -0.7
1,562,241 + Ga0059261_1479 0.10 +0.3
1,562,241 + Ga0059261_1479 0.10 +0.3
1,562,241 + Ga0059261_1479 0.10 +0.3
1,562,241 + Ga0059261_1479 0.10 -0.1
1,562,241 + Ga0059261_1479 0.10 +0.3
1,562,241 + Ga0059261_1479 0.10 -0.4
1,562,242 - +0.7
1,562,242 - Ga0059261_1479 0.10 -0.7
1,562,242 - Ga0059261_1479 0.10 +0.0
1,562,242 - Ga0059261_1479 0.10 +0.2
1,562,242 - Ga0059261_1479 0.10 -0.2
1,562,242 - Ga0059261_1479 0.10 +0.6
1,562,242 - Ga0059261_1479 0.10 -0.2
1,562,242 - Ga0059261_1479 0.10 -0.8
1,562,257 + Ga0059261_1479 0.12 -0.1
1,562,257 + Ga0059261_1479 0.12 +0.5
1,562,257 + Ga0059261_1479 0.12 +1.2
1,562,258 - Ga0059261_1479 0.12 +0.7
1,562,258 - Ga0059261_1479 0.12 +0.2
1,562,418 + Ga0059261_1479 0.28 -0.5
1,562,418 + Ga0059261_1479 0.28 +0.8
1,562,418 + Ga0059261_1479 0.28 -0.1
1,562,418 + Ga0059261_1479 0.28 -0.7
1,562,419 - Ga0059261_1479 0.28 +0.5
1,562,419 - Ga0059261_1479 0.28 +0.9
1,562,507 + Ga0059261_1479 0.37 +0.0
1,562,595 + Ga0059261_1479 0.45 +0.2
1,562,595 + Ga0059261_1479 0.45 -0.8
1,562,595 + Ga0059261_1479 0.45 -0.5
1,562,596 - Ga0059261_1479 0.46 -0.5
1,562,596 - Ga0059261_1479 0.46 -0.7
1,562,875 + Ga0059261_1479 0.73 +0.7
1,562,953 + Ga0059261_1479 0.81 -0.6
1,562,953 + Ga0059261_1479 0.81 -0.4
1,562,953 + Ga0059261_1479 0.81 -1.2
1,562,954 - Ga0059261_1479 0.81 -0.3
1,563,046 + +0.3
1,563,134 + -0.1
1,563,134 + -1.0
1,563,134 + -0.5
1,563,135 - -0.8
1,563,135 - +0.3
1,563,135 - +0.7
1,563,135 - -0.4

Or see this region's nucleotide sequence